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BaseInfo

ncRNA ID novel_zma_miR4690
Species Zea mays
Class miRNA
Genome position Chr8:91161258-91161397 [+]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 117 - CGGUGGCACACCGGACUGUCGGGU - 140
Stem-loop(if miRNA) -- G   U    A      -      AA   UCCGGUGCACCAACCAGCCCGAAGUUGCAACGGUCGGCUG
  C GAC GUCC GUGUGC ACCGGA  GUG                                        C
  | ||| |||| |||||| ||||||  |||                                        G
  G CUG CAGG CACACG UGGCCU  GUC                                        C
UG G   U    C      G      --   GGUGACAAGUACAGGCCACGCGCUAAGGGAAGGUAAGGAU
Stem-loop sequence CGGACUGUCCAGUGUGCACCGGAAAGUGUCCGGUGCACCAACCAGCCCGAAGUUGCAACGGUCGGCUGCGCUAGGAAUGGAAGGGAAUCGCGCACCGGACAUGAACAGUGGCUGUCCGGUGGCACACCGGACUGUCGGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ065990.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:7   ACCGGACAGUCCGGUGCGCCACCG   30

1.5 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
EZ078322.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||||
targets:32   ACCGGACUGUCCGGUGUGCCACCG   55

1.0 TSA: Zea mays contig13961, mRNA sequence NA coding protein psRNATarget
EZ091678.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||||
targets:19   ACCGGACUGUCCGGUGUGCCACCG   42

1.0 TSA: Zea mays contig27327, mRNA sequence NA coding protein psRNATarget
HI410005.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:12   ACCAGACAGUCCGGUGCGCCACCG   35

1.5 Sequence 8130 from Patent EP2074227 NA coding protein psRNATarget
LQ242135.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:12   ACCAGACAGUCCGGUGCGCCACCG   35

1.5 Sequence 8130 from Patent EP2985353 NA coding protein psRNATarget
JB170466.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:12   ACCAGACAGUCCGGUGCGCCACCG   35

1.5 Sequence 8130 from Patent EP2559767 NA coding protein psRNATarget
BT066461.2
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:492   ACCAGACAGUCCGGUGCGCCACCG   515

1.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU948808.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||||
targets:303   ACCGGACUGUCCGGUGUGCCACCG   326

1.0 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:596   ACCGGACAGUCCGGUGCGCCACCG   619

1.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||||||||*|||||||
targets:596   ACCGGACAGUCCGGUGCGCCACCG   619

1.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT069667.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||||
targets:1279   ACCGGACUGUCCGGUGUGCCACCG   1302

1.0 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
NM_001176839.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||||
targets:1279   ACCGGACUGUCCGGUGUGCCACCG   1302

1.0 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
EZ077288.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||=|||||||||||||
targets:44   ACCAGACUGUUCGGUGUGCCACCG   67

2.0 TSA: Zea mays contig12925, mRNA sequence NA coding protein psRNATarget
JB169550.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  ||=*||||||||||||*|||||||
targets:74   ACUGGACAGUCCGGUGCGCCACCG   97

1.5 Sequence 7214 from Patent EP2559767 NA coding protein psRNATarget
LQ241219.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  ||=*||||||||||||*|||||||
targets:74   ACUGGACAGUCCGGUGCGCCACCG   97

1.5 Sequence 7214 from Patent EP2985353 NA coding protein psRNATarget
HI409089.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  ||=*||||||||||||*|||||||
targets:74   ACUGGACAGUCCGGUGCGCCACCG   97

1.5 Sequence 7214 from Patent EP2074227 NA coding protein psRNATarget
BT069074.2
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*||||||=|||||*|||||||
targets:423   ACCGGACAGUUCGGUGCGCCACCG   446

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
XM_020542612.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |=|*|||*||||||||||||||||
targets:1246   AUCGGACUGUCCGGUGUGCCACCG   1269

1.0 PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008657658.2
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |=|*|||*||||||||||||||||
targets:1330   AUCGGACUGUCCGGUGUGCCACCG   1353

1.0 PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA NA coding protein psRNATarget
EU952168.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||||||=|
targets:310   ACCGGACUGUCCGGUGUGCCACUG   333

2.5 Zea mays clone 1215356 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU952168.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  ||=**||*||||||||||||||||
targets:330   ACUGAACUGUCCGGUGUGCCACCG   353

1.0 Zea mays clone 1215356 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB170191.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||||*
targets:9   ACCGGACUGUCCGGUGUGCCACCA   32

2.0 Sequence 7855 from Patent EP2559767 NA coding protein psRNATarget
LQ241860.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||||*
targets:9   ACCGGACUGUCCGGUGUGCCACCA   32

2.0 Sequence 7855 from Patent EP2985353 NA coding protein psRNATarget
HI409730.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||||*
targets:9   ACCGGACUGUCCGGUGUGCCACCA   32

2.0 Sequence 7855 from Patent EP2074227 NA coding protein psRNATarget
BT060603.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||||*
targets:1068   ACCGGACUGUCCGGUGUGCCACCA   1091

2.0 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
BT042818.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||*||
targets:616   ACCGGACUGUCCGGUGUGCCAGCG   639

2.5 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*||||||||||*|||||
targets:624   ACCGGACUGUCCGGUGUGGCACCG   647

2.5 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
BT064671.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||*|||||||||||||*||
targets:1112   ACCGGACUGUCCGGUGUGCCAGCG   1135

2.5 Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds NA coding protein psRNATarget
EU952213.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  ||=*||**||||||||||||||||
targets:69   ACUGGAAUGUCCGGUGUGCCACCG   92

2.0 Zea mays clone 1226497 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ112673.1
ncRNA:24   UGGGCUGUCAGGCCACACGGUGGC   1
  |||*|||**||||||||||||||*
targets:65   ACCAGACUAUCCGGUGUGCCACCU   88

3.0 TSA: Zea mays contig48334, mRNA sequence NA coding protein psRNATarget
LQ238952.1
ncRNA:24   UGGGCU-GUCAGGCCACACGGUGGC   1
  ||**||-|*||||||||||||||||
targets:15   ACAGGAGCUGUCCGGUGUGCCACCG   39

3.0 Sequence 4947 from Patent EP2985353 NA coding protein psRNATarget
JB167283.1
ncRNA:24   UGGGCU-GUCAGGCCACACGGUGGC   1
  ||**||-|*||||||||||||||||
targets:15   ACAGGAGCUGUCCGGUGUGCCACCG   39

3.0 Sequence 4947 from Patent EP2559767 NA coding protein psRNATarget
HI406822.1
ncRNA:24   UGGGCU-GUCAGGCCACACGGUGGC   1
  ||**||-|*||||||||||||||||
targets:15   ACAGGAGCUGUCCGGUGUGCCACCG   39

3.0 Sequence 4947 from Patent EP2074227 NA coding protein psRNATarget
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