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BaseInfo

ncRNA ID	novel_zma_miR4689
Species	Zea mays
Class	miRNA
Genome position	Chr8:90851817-90851955 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - CCUGCGCACGCGUGGACCGUCUGG - 24
Stem-loop(if miRNA)	--C       C   UG   C     G CUA    A  ------GAA  GUUCGGCACGUCCGACCCAUCAGGC    CUGCGCA GCG  GAC GUCUG C   UAGG GC         CC                         A    ||||||| |||  ||| ||||| |   |||| ||         ||    GACGUGU CGC  CUG CAGGC G   AUCC CG         GU                         G AGA       C   GU   C     - UCG    C  AUCUACCAG  GCUGGCCUGUGUUCCGAGCCCAAAG
Stem-loop sequence	CCUGCGCACGCGUGGACCGUCUGGCCUAUAGGAGCGAACCGUUCGGCACGUCCGACCCAUCAGGCAGGAAACCCGAGCCUUGUGUCCGGUCGUGGACCAUCUAGCCCCUAGCUGCGGACCGUCUGCGCCUGUGCAGAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT061906.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||| targets:286   CCGGACGGUCCGCGCGUGCGCAGG   309 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||| targets:794   CCGGACGGUCCGCGCGUGCGCAGG   817 Target Full Sequence	1.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
XM_020547963.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||| targets:1128   CCGGACGGUCCGCGCGUGCGCAGG   1151 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100501411), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085255.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||| targets:1553   CCGGACGGUCCGCGCGUGCGCAGG   1576 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0345D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196134.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||| targets:1553   CCGGACGGUCCGCGCGUGCGCAGG   1576 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100501411), mRNA	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   =|=||||||||=|||||||||||| targets:1754   UCGGACGGUCCGCGCGUGCGCAGG   1777 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   =|=||||||||=|||||||||||| targets:1754   UCGGACGGUCCGCGCGUGCGCAGG   1777 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:345   CCGGACGGUCCGCGCGUGCGCAGA   368 Target Full Sequence	2.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:867   CCGGACGGUCCGCGCGUGCGCAGA   890 Target Full Sequence	2.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174685.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1333   CCGGACGGUCCGCGCGUGCGCAGA   1356 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381908 (LOC100381908), mRNA	NA	coding protein	psRNATarget
BT062567.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1333   CCGGACGGUCCGCGCGUGCGCAGA   1356 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315B06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1458   CCGGACGGUCCGCGCGUGCGCAGA   1481 Target Full Sequence	2.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1458   CCGGACGGUCCGCGCGUGCGCAGA   1481 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1443   CCGGACGGUCCGCGCGUGCGCAGA   1466 Target Full Sequence	2.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:1525   CCGGACGGUCCGCGCGUGCGCAGA   1548 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=||||||||=|||||||||||* targets:2228   CCGGACGGUCCGCGCGUGCGCAGA   2251 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   *|=||||||||=|||||||||||* targets:782   GCGGACGGUCCGCGCGUGCGCAGA   805 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   *|=||||||||=|||||||||||* targets:782   GCGGACGGUCCGCGCGUGCGCAGA   805 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
HI408731.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=|||||||||||*||||||||* targets:4   CCGGACGGUCCACGGGUGCGCAGA   27 Target Full Sequence	2.5	Sequence 6856 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240861.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=|||||||||||*||||||||* targets:4   CCGGACGGUCCACGGGUGCGCAGA   27 Target Full Sequence	2.5	Sequence 6856 from Patent EP2985353	NA	coding protein	psRNATarget
JB169192.1	ncRNA:24   GGUCUGCCAGGUGCGCACGCGUCC   1   ||=|||||||||||*||||||||* targets:4   CCGGACGGUCCACGGGUGCGCAGA   27 Target Full Sequence	2.5	Sequence 6856 from Patent EP2559767	NA	coding protein	psRNATarget