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BaseInfo

ncRNA ID novel_zma_miR4686
Species Zea mays
Class miRNA
Genome position Chr8:14158065-14158164 [-]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 1 - AAAAUGUGACAAGUUAGACAGCGA - 24
Stem-loop(if miRNA) --  A -      G          -------------              CG   G
  GU G CUAACU UGUCACAUUU             UGUCUAAGGUUAGU  UUC A
  || | |||||| ||||||||||             ||||||||||||||  ||| A
  CG C GAUUGA ACAGUGUAAA             ACAGAUUCCAAUCA  AAG U
AG  A A      -          ACGGAUUGAAAAC              AG   U
Stem-loop sequence GUAGCUAACUGUGUCACAUUUUGUCUAAGGUUAGUCGUUCGAAUUGAAGAACUAACCUUAGACACAAAAGUUAGGCAAAAUGUGACAAGUUAGACAGCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403286.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  ||||||*|||||||||||||*|||
targets:15   UCGCUGCCUAACUUGUCACACUUU   38

2.5 Sequence 1411 from Patent EP2074227 NA coding protein psRNATarget
LQ235416.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  ||||||*|||||||||||||*|||
targets:15   UCGCUGCCUAACUUGUCACACUUU   38

2.5 Sequence 1411 from Patent EP2985353 NA coding protein psRNATarget
JB163747.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  ||||||*|||||||||||||*|||
targets:15   UCGCUGCCUAACUUGUCACACUUU   38

2.5 Sequence 1411 from Patent EP2559767 NA coding protein psRNATarget
BT062066.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  |=|*||*|||||||||||=|||||
targets:1520   UUGAUGGCUAACUUGUCAUAUUUU   1543

2.5 Zea mays full-length cDNA clone ZM_BFb0211I24 mRNA, complete cds NA coding protein psRNATarget
NM_001175121.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  |=|*||*|||||||||||=|||||
targets:1935   UUGAUGGCUAACUUGUCAUAUUUU   1958

2.5 Zea mays UDP-glycosyltransferase 83A1 (LOC100382376), mRNA NA coding protein psRNATarget
BT064093.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  |=|*||*|||||||||||=|||||
targets:1935   UUGAUGGCUAACUUGUCAUAUUUU   1958

2.5 Zea mays full-length cDNA clone ZM_BFc0137J11 mRNA, complete cds NA coding protein psRNATarget
XM_020540795.1
ncRNA:24   AGCGACAGAUUGAACAGUGUAAAA   1
  ||-|||*||||||||*||||||||
targets:690   UC-CUGCCUAACUUGCCACAUUUU   712

2.5 PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA NA coding protein psRNATarget