Search result

BaseInfo

ncRNA ID	novel_zma_miR4683
Species	Zea mays
Class	miRNA
Genome position	Chr8:69671315-69671387 [-]
Reference genome	RefGen_v4
Source	SRR2287162;SRR2089701
Length	21
Mature sequence(if miRNA)	1 - AUGCACUAGAGCUAAUGGUUA - 21
Stem-loop(if miRNA)	--             -          -   CCUAACU   ACUAUUAGCUCUA UGCAUUCAAA CAC       A   ||||||||||||| |||||||||| |||       U   UGGUAAUCGAGAU ACGUAAGUUU GUG       U AU             C          C   AUCUUUA
Stem-loop sequence	ACUAUUAGCUCUAUGCAUUCAAACACCCUAACUAUUAUUUCUAGUGCUUUGAAUGCACUAGAGCUAAUGGUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167676.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:152   UAACUAUUAGCUCUAGUGCAU   172 Target Full Sequence	1.0	Sequence 5340 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239345.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:152   UAACUAUUAGCUCUAGUGCAU   172 Target Full Sequence	1.0	Sequence 5340 from Patent EP2985353	NA	coding protein	psRNATarget
HI407215.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:152   UAACUAUUAGCUCUAGUGCAU   172 Target Full Sequence	1.0	Sequence 5340 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020547482.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:104   UAACUAUUAGCUCUAGUGCAU   124 Target Full Sequence	1.0	PREDICTED: Zea mays adenylyl-sulfate kinase (LOC100217102), transcript variant X6, mRNA	NA	coding protein	psRNATarget
BT067062.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1171   UAACUAUUAGCUCUAGUGCAU   1191 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget
BT067062.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||*||||||||||| targets:948   UAACUAUUAUCUCUAGUGCAU   968 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds	NA	coding protein	psRNATarget
BT083782.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1230   UAACUAUUAGCUCUAGUGCAU   1250 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0039K15 mRNA, complete cds	NA	coding protein	psRNATarget
BT037911.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1285   UAACUAUUAGCUCUAGUGCAU   1305 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0202I17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143457.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1285   UAACUAUUAGCUCUAGUGCAU   1305 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100217088), mRNA	NA	coding protein	psRNATarget
XM_008674069.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1267   UAACUAUUAGCUCUAGUGCAU   1287 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549505.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:428   UAACUAUUAGCUCUAGUGCAU   448 Target Full Sequence	1.0	PREDICTED: Zea mays Protein LSD1 (cl889_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT060604.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1513   UAACUAUUAGCUCUAGUGCAU   1533 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0022G03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008674068.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1645   UAACUAUUAGCUCUAGUGCAU   1665 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100217088), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943162.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:1742   UAACUAUUAGCUCUAGUGCAU   1762 Target Full Sequence	1.0	Zea mays clone 1574300 mRNA sequence	NA	coding protein	psRNATarget
XM_008657422.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:4204   UAACUAUUAGCUCUAGUGCAU   4224 Target Full Sequence	1.0	PREDICTED: Zea mays probable LRR receptor-like serine/threonine-protein kinase At3g47570 (LOC103634832), mRNA	NA	coding protein	psRNATarget
XM_020545827.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||||||||=|||||||||| targets:1071   UAACCAUUAGUUCUAGUGCAU   1091 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:825   UAACUAUUAGCUCUAGUGCAU   845 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||||| targets:2116   UAACUAUUAGCUCUAGUGCAU   2136 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||*||||||||||| targets:1272   UAACUAUUACCUCUAGUGCAU   1292 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ105418.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:96   UAACUAUUAGUUCUAGUGCAU   116 Target Full Sequence	2.5	TSA: Zea mays contig41075, mRNA sequence	NA	coding protein	psRNATarget
HI406978.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:6   UAAUUAUUAGCUCUAGUGCAU   26 Target Full Sequence	2.0	Sequence 5103 from Patent EP2074227	NA	coding protein	psRNATarget
JB167439.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:6   UAAUUAUUAGCUCUAGUGCAU   26 Target Full Sequence	2.0	Sequence 5103 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239108.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:6   UAAUUAUUAGCUCUAGUGCAU   26 Target Full Sequence	2.0	Sequence 5103 from Patent EP2985353	NA	coding protein	psRNATarget
HI403037.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||=|||||||| targets:173   UAACUAUUAGCUUUAGUGCAU   193 Target Full Sequence	2.5	Sequence 1162 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235167.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||=|||||||| targets:173   UAACUAUUAGCUUUAGUGCAU   193 Target Full Sequence	2.5	Sequence 1162 from Patent EP2985353	NA	coding protein	psRNATarget
JB163498.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||=|||||||| targets:173   UAACUAUUAGCUUUAGUGCAU   193 Target Full Sequence	2.5	Sequence 1162 from Patent EP2559767	NA	coding protein	psRNATarget
BT038068.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:728   UAACUAUUAGUUCUAGUGCAU   748 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0210C05 mRNA, complete cds	NA	coding protein	psRNATarget
BT064892.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:409   UAACUAUUAGUUCUAGUGCAU   429 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0339N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT036471.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:700   UAAUUAUUAGCUCUAGUGCAU   720 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0118B10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139105.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:814   UAAUUAUUAGCUCUAGUGCAU   834 Target Full Sequence	2.0	Zea mays SWR1 complex subunit 6 (LOC100194045), mRNA	NA	coding protein	psRNATarget
EU974177.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||==|||||||||||||||| targets:814   UAAUUAUUAGCUCUAGUGCAU   834 Target Full Sequence	2.0	Zea mays clone 442071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678485.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:2967   UAACUAUUAGUUCUAGUGCAU   2987 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008678483.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:3419   UAACUAUUAGUUCUAGUGCAU   3439 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678484.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:3400   UAACUAUUAGUUCUAGUGCAU   3420 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001317389.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:3421   UAACUAUUAGUUCUAGUGCAU   3441 Target Full Sequence	2.5	Zea mays Retinoblastoma-related protein 1 (LOC100217179), mRNA	NA	coding protein	psRNATarget
XM_008678482.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||=|||||||||| targets:3418   UAACUAUUAGUUCUAGUGCAU   3438 Target Full Sequence	2.5	PREDICTED: Zea mays Retinoblastoma-related protein 1 (LOC100217179), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646094.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||=|||||||| targets:773   UAACUAUUAGCUUUAGUGCAU   793 Target Full Sequence	2.5	PREDICTED: Zea mays inactive poly [ADP-ribose] polymerase RCD1 (LOC103625711), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235137.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||*=|||||||||||||||| targets:138   UAAAUAUUAGCUCUAGUGCAU   158 Target Full Sequence	2.0	Sequence 1132 from Patent EP2985353	NA	coding protein	psRNATarget
JB163468.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||*=|||||||||||||||| targets:138   UAAAUAUUAGCUCUAGUGCAU   158 Target Full Sequence	2.0	Sequence 1132 from Patent EP2559767	NA	coding protein	psRNATarget
HI403007.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||*=|||||||||||||||| targets:138   UAAAUAUUAGCUCUAGUGCAU   158 Target Full Sequence	2.0	Sequence 1132 from Patent EP2074227	NA	coding protein	psRNATarget
BT063644.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1013   UAACUAUUAGCUCUAGUACAU   1033 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175005.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1013   UAACUAUUAGCUCUAGUACAU   1033 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA	NA	coding protein	psRNATarget
AF305892.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||||||||||*|| targets:1885   UAACUAUUAGCUCUAGUGGAU   1905 Target Full Sequence	2.5	Zea mays microtubule-binding protein TANGLED1 mRNA, complete cds	NA	coding protein	psRNATarget
BT039577.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||*||||||||||| targets:1256   UAACUAUUAACUCUAGUGCAU   1276 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0031C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152524.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:2317   UAACUAUUAGCUCUAAUGCAU   2337 Target Full Sequence	2.5	Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), mRNA	NA	coding protein	psRNATarget
BT063004.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:2317   UAACUAUUAGCUCUAAUGCAU   2337 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016A10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||*|||||||||| targets:1185   UAACUAUUAGGUCUAGUGCAU   1205 Target Full Sequence	2.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537567.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=|||||*|||||||||| targets:1247   UAACUAUUAGGUCUAGUGCAU   1267 Target Full Sequence	2.5	PREDICTED: Zea mays MADS2 (zmm2), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548417.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1894   UAACUAUUAGCUCUAGUACAU   1914 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020548416.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1894   UAACUAUUAGCUCUAGUACAU   1914 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548414.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1894   UAACUAUUAGCUCUAGUACAU   1914 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548415.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||||*||| targets:1979   UAACUAUUAGCUCUAGUACAU   1999 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648954 (LOC103648954), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:1998   UAACUAUUAGCUCUAAUGCAU   2018 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:2042   UAACUAUUAGCUCUAAUGCAU   2062 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:2252   UAACUAUUAGCUCUAAUGCAU   2272 Target Full Sequence	2.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548642.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   ||||=||||||||||*||||| targets:2288   UAACUAUUAGCUCUAAUGCAU   2308 Target Full Sequence	2.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542354.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||*=|||||||||||||||| targets:4398   UAAAUAUUAGCUCUAGUGCAU   4418 Target Full Sequence	2.0	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658477.2	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   |||*=|||||||||||||||| targets:4398   UAAAUAUUAGCUCUAGUGCAU   4418 Target Full Sequence	2.0	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ060651.1	ncRNA:21   AUUGGUAAUCGAGAUCACGUA   1   **|||||||||||||||*||| targets:92   GCACCAUUAGCUCUAGUACAU   112 Target Full Sequence	1.5	TSA: Zea mays contig61773, mRNA sequence	NA	coding protein	psRNATarget