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BaseInfo

ncRNA ID novel_zma_miR4682
Species Zea mays
Class miRNA
Genome position Chr8:76710055-76710180 [-]
Reference genome RefGen_v4
Source SRR2287162;SRR2287163;SRR1997865;SRR5451005;SRR1997866;SRR2089703
Length 24
Mature sequence(if miRNA) 1 - AUCCGACACAAACGAACAAGGCUU - 24
Stem-loop(if miRNA) --             ACA        --CACC      C      -   --AAUCAAAA    UA
  GCCUUGUUCGUUU   UCGGAUUG      CGGAAU AUUCCG GCU          UUUA  U
  |||||||||||||   ||||||||      |||||| |||||| |||          ||||  A
  CGGAACAAGCAAA   AGCCUAAC      GCCUUG UAAGGC CGG          AGAU  A
UU             CAC        CACCCA      C      U   CCUAACGAAG    UA
Stem-loop sequence GCCUUGUUCGUUUACAUCGGAUUGCACCCGGAAUCAUUCCGGCUAAUCAAAAUUUAUAUAAAUUAGAGAAGCAAUCCGGCUCGGAAUCGUUCCGACCCACCAAUCCGACACAAACGAACAAGGCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166422.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

0.0 Sequence 4086 from Patent EP2559767 NA coding protein psRNATarget
LQ238091.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

0.0 Sequence 4086 from Patent EP2985353 NA coding protein psRNATarget
HI405961.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:9   AGGCCUUGUUCGUUUGUGUCGGAU   32

0.0 Sequence 4086 from Patent EP2074227 NA coding protein psRNATarget
LQ238058.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4053 from Patent EP2985353 NA coding protein psRNATarget
JB166389.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4053 from Patent EP2559767 NA coding protein psRNATarget
HI405928.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4053 from Patent EP2074227 NA coding protein psRNATarget
JB166395.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4059 from Patent EP2559767 NA coding protein psRNATarget
HI405934.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4059 from Patent EP2074227 NA coding protein psRNATarget
JB166392.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4056 from Patent EP2559767 NA coding protein psRNATarget
HI405931.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4056 from Patent EP2074227 NA coding protein psRNATarget
LQ238061.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4056 from Patent EP2985353 NA coding protein psRNATarget
LQ238064.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:10   AGGCCUUGUUCGUUUGUGUCGGAU   33

0.0 Sequence 4059 from Patent EP2985353 NA coding protein psRNATarget
JB166375.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4039 from Patent EP2559767 NA coding protein psRNATarget
LQ238036.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4031 from Patent EP2985353 NA coding protein psRNATarget
LQ238040.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4035 from Patent EP2985353 NA coding protein psRNATarget
HI405905.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4030 from Patent EP2074227 NA coding protein psRNATarget
LQ238044.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4039 from Patent EP2985353 NA coding protein psRNATarget
LQ238035.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4030 from Patent EP2985353 NA coding protein psRNATarget
HI405910.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4035 from Patent EP2074227 NA coding protein psRNATarget
LQ238037.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4032 from Patent EP2985353 NA coding protein psRNATarget
HI405907.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4032 from Patent EP2074227 NA coding protein psRNATarget
HI405914.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4039 from Patent EP2074227 NA coding protein psRNATarget
JB166366.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4030 from Patent EP2559767 NA coding protein psRNATarget
JB166368.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4032 from Patent EP2559767 NA coding protein psRNATarget
JB166371.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4035 from Patent EP2559767 NA coding protein psRNATarget
JB166367.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4031 from Patent EP2559767 NA coding protein psRNATarget
HI405906.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:11   AGGCCUUGUUCGUUUGUGUCGGAU   34

0.0 Sequence 4031 from Patent EP2074227 NA coding protein psRNATarget
EZ056395.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:34   AGGCCUUGUUCGUUUGUGUCGGAU   57

0.0 TSA: Zea mays contig57517, mRNA sequence NA coding protein psRNATarget
AY105834.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:755   AGGCCUUGUUCGUUUGUGUCGGAU   778

0.0 Zea mays PCO093864 mRNA sequence NA coding protein psRNATarget
XM_008673797.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:837   AGGCCUUGUUCGUUUGUGUCGGAU   860

0.0 PREDICTED: Zea mays uncharacterized LOC100278465 (LOC100278465), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001111367.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:1093   AGGCCUUGUUCGUUUGUGUCGGAU   1116

0.0 Zea mays Ferredoxin-6, chloroplastic (pco072676(750)), mRNA NA coding protein psRNATarget
BT019200.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:941   AGGCCUUGUUCGUUUGUGUCGGAU   964

0.0 Zea mays clone Contig873.F mRNA sequence NA coding protein psRNATarget
BT088026.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:1187   AGGCCUUGUUCGUUUGUGUCGGAU   1210

0.0 Zea mays full-length cDNA clone ZM_BFb0366I22 mRNA, complete cds NA coding protein psRNATarget
NM_001196885.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:1187   AGGCCUUGUUCGUUUGUGUCGGAU   1210

0.0 Zea mays Protein kinase superfamily protein (LOC100502407), mRNA NA coding protein psRNATarget
BT068430.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:453   AGGCCUUGUUCGUUUGUGUCGGAU   476

0.0 Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds NA coding protein psRNATarget
XM_008647453.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3270   AGGCCUUGUUCGUUUGUGUCGGAU   3293

0.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647452.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3258   AGGCCUUGUUCGUUUGUGUCGGAU   3281

0.0 PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539404.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3425   AGGCCUUGUUCGUUUGUGUCGGAU   3448

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020539406.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3443   AGGCCUUGUUCGUUUGUGUCGGAU   3466

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020539386.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3460   AGGCCUUGUUCGUUUGUGUCGGAU   3483

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020539392.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3478   AGGCCUUGUUCGUUUGUGUCGGAU   3501

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539417.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:3728   AGGCCUUGUUCGUUUGUGUCGGAU   3751

0.0 PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020538731.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||||||||
targets:5238   AGGCCUUGUUCGUUUGUGUCGGAU   5261

0.0 PREDICTED: Zea mays UDP-glucose:glycoprotein glucosyltransferase (LOC103627875), mRNA NA coding protein psRNATarget
EZ517098.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||||||||
targets:97   AGGUCUUGUUCGUUUGUGUCGGAU   120

0.0 TSA: Zea mays cultivar W22 CL501Contig1.betc, mRNA sequence NA coding protein psRNATarget
BT041125.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||||||||
targets:1261   AGGUCUUGUUCGUUUGUGUCGGAU   1284

0.0 Zea mays full-length cDNA clone ZM_BFc0177J19 mRNA, complete cds NA coding protein psRNATarget
JB166331.1
ncRNA:23   UCGGAACAAGCAAACACAGCCUA   1
  =||||||||||||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

0.0 Sequence 3995 from Patent EP2559767 NA coding protein psRNATarget
HI405870.1
ncRNA:23   UCGGAACAAGCAAACACAGCCUA   1
  =||||||||||||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

0.0 Sequence 3995 from Patent EP2074227 NA coding protein psRNATarget
LQ238000.1
ncRNA:23   UCGGAACAAGCAAACACAGCCUA   1
  =||||||||||||||||||||||
targets:1   GGCCUUGUUCGUUUGUGUCGGAU   23

0.0 Sequence 3995 from Patent EP2985353 NA coding protein psRNATarget
HI405935.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

0.0 Sequence 4060 from Patent EP2074227 NA coding protein psRNATarget
JB166396.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

0.0 Sequence 4060 from Patent EP2559767 NA coding protein psRNATarget
LQ238065.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:6   AAACCUUGUUCGUUUGUGUCGGAU   29

0.0 Sequence 4060 from Patent EP2985353 NA coding protein psRNATarget
NM_001138328.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:1244   AAACCUUGUUCGUUUGUGUCGGAU   1267

0.0 Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA NA coding protein psRNATarget
BT035367.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:1244   AAACCUUGUUCGUUUGUGUCGGAU   1267

0.0 Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds NA coding protein psRNATarget
EU972216.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ||*|||||||||||||||||||||
targets:1262   AAACCUUGUUCGUUUGUGUCGGAU   1285

0.0 Zea mays clone 377576 mRNA sequence NA coding protein psRNATarget
LQ238070.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2985353 NA coding protein psRNATarget
JB166397.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2559767 NA coding protein psRNATarget
HI405939.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2074227 NA coding protein psRNATarget
JB166400.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2559767 NA coding protein psRNATarget
JB166401.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2559767 NA coding protein psRNATarget
LQ238075.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2985353 NA coding protein psRNATarget
LQ238066.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2985353 NA coding protein psRNATarget
LQ238069.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2985353 NA coding protein psRNATarget
HI405940.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2074227 NA coding protein psRNATarget
HI405936.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2074227 NA coding protein psRNATarget
JB166406.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2559767 NA coding protein psRNATarget
HI405945.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2074227 NA coding protein psRNATarget
HI405933.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2074227 NA coding protein psRNATarget
JB166394.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2559767 NA coding protein psRNATarget
LQ238063.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2985353 NA coding protein psRNATarget
LQ237934.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2985353 NA coding protein psRNATarget
JB166265.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2559767 NA coding protein psRNATarget
HI405804.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2074227 NA coding protein psRNATarget
JB166409.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2559767 NA coding protein psRNATarget
LQ238078.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2985353 NA coding protein psRNATarget
HI405948.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2074227 NA coding protein psRNATarget
HI405923.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261

1.5 Sequence 4048 from Patent EP2074227 NA coding protein psRNATarget
LQ238053.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261

1.5 Sequence 4048 from Patent EP2985353 NA coding protein psRNATarget
JB166384.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:238   AGGCCUUGUUCGUUUCUGUCGGAU   261

1.5 Sequence 4048 from Patent EP2559767 NA coding protein psRNATarget
EU942882.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:71   AGGCCUUGUUCGUUUGUGCCGGAU   94

1.5 Zea mays clone 1543225 mRNA sequence NA coding protein psRNATarget
EZ063705.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||*|||||||
targets:247   AGGCCUUGUUCGUUUGCGUCGGAU   270

1.5 TSA: Zea mays contig64827, mRNA sequence NA coding protein psRNATarget
EZ109082.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:14   AGGCCUUGUUCGUUUGUGCCGGAU   37

1.5 TSA: Zea mays contig44741, mRNA sequence NA coding protein psRNATarget
EU941248.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:114   AGGCCUUGUUCGUUUCUGUCGGAU   137

1.5 Zea mays clone 1431203 mRNA sequence NA coding protein psRNATarget
BT017425.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||||*||||||
targets:757   AGGCCUUGUUCGUUUGUAUCGGAU   780

1.5 Zea mays clone EL01N0402H01.c mRNA sequence NA coding protein psRNATarget
EU953779.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:620   AGGCCUUGUUCGUUUGUGCCGGAU   643

1.5 Zea mays clone 1445891 mRNA sequence NA coding protein psRNATarget
BT063869.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||||*||||||
targets:822   AGGCCUUGUUCGUUUGUAUCGGAU   845

1.5 Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds NA coding protein psRNATarget
AY107168.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:857   AGGCCUUGUUCGUUUGUGCCGGAU   880

1.5 Zea mays PCO087750 mRNA sequence NA coding protein psRNATarget
EU965080.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:1536   AGGCCUUGUUCGUUUCUGUCGGAU   1559

1.5 Zea mays clone 283644 mRNA sequence NA coding protein psRNATarget
NM_001138362.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA NA coding protein psRNATarget
BT035415.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds NA coding protein psRNATarget
XM_008676360.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||||||||
targets:1821   AGGGCUUGUUCGUUUGUGUCGGAU   1844

0.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676377.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||||||||
targets:1895   AGGGCUUGUUCGUUUGUGUCGGAU   1918

0.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676366.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||||||||
targets:1913   AGGGCUUGUUCGUUUGUGUCGGAU   1936

0.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008676374.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||||||||
targets:1989   AGGGCUUGUUCGUUUGUGUCGGAU   2012

0.0 PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538654.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||*|||||||
targets:763   AGGCCUUGUUCGUUUGCGUCGGAU   786

1.5 PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001175834.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||||*||||||
targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875

1.5 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
BT066445.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||||*||||||
targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875

1.5 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
XM_020538690.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||||||||||*|||||
targets:4118   AGGCCUUGUUCGUUUGUGCCGGAU   4141

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA NA coding protein psRNATarget
XM_020540976.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||||||||||*||||||||
targets:4412   AGGCCUUGUUCGUUUCUGUCGGAU   4435

1.5 PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA NA coding protein psRNATarget
HI405951.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
JB166412.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
LQ238081.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
JB166391.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2559767 NA coding protein psRNATarget
HI405930.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2074227 NA coding protein psRNATarget
LQ238060.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2985353 NA coding protein psRNATarget
HI407339.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=|||||||||||*||||||||
targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32

1.5 Sequence 5464 from Patent EP2074227 NA coding protein psRNATarget
LQ239469.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=|||||||||||*||||||||
targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32

1.5 Sequence 5464 from Patent EP2985353 NA coding protein psRNATarget
JB167800.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=|||||||||||*||||||||
targets:9   AGGUCUUGUUCGUUUCUGUCGGAU   32

1.5 Sequence 5464 from Patent EP2559767 NA coding protein psRNATarget
BT083852.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  ==|*||||||||||||||||||||
targets:353   GGGACUUGUUCGUUUGUGUCGGAU   376

0.0 Zea mays full-length cDNA clone ZM_BFb0047A08 mRNA, complete cds NA coding protein psRNATarget
EZ060491.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||=|||||||||||*|||||||
targets:124   AGGCUUUGUUCGUUUGCGUCGGAU   147

1.5 TSA: Zea mays contig61613, mRNA sequence NA coding protein psRNATarget
EU952826.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||=|||||||||||*|||||||
targets:647   AGGCUUUGUUCGUUUGCGUCGGAU   670

1.5 Zea mays clone 1290653 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EZ061700.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||=|||||||||||||*|||||
targets:88   AGGCUUUGUUCGUUUGUGCCGGAU   111

1.5 TSA: Zea mays contig62822, mRNA sequence NA coding protein psRNATarget
BT017671.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:869   AGGUCUUGUUCGUUUGUGCCGGAU   892

1.5 Zea mays clone EL01N0442B02.c mRNA sequence NA coding protein psRNATarget
EU957814.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=||||||||=||||||||||*||
targets:983   AGGCCUUGUUUGUUUGUGUCGAAU   1006

2.5 Zea mays clone 1624339 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001177010.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=|||*||||||||||||||||
targets:1085   AGGUCUUAUUCGUUUGUGUCGGAU   1108

1.0 Zea mays DRE-binding protein 4 (DBP4), mRNA NA coding protein psRNATarget
FJ805752.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=|||*||||||||||||||||
targets:1085   AGGUCUUAUUCGUUUGUGUCGGAU   1108

1.0 Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds NA coding protein psRNATarget
XM_020549216.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:138   AGGUCUUGUUCGUUUGUGCCGGAU   161

1.5 PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA NA coding protein psRNATarget
BT054540.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|||||*|||||||||||=||||
targets:1739   AGGCCUUUUUCGUUUGUGUUGGAU   1762

2.5 Zea mays full-length cDNA clone ZM_BFc0148H17 mRNA, complete cds NA coding protein psRNATarget
XM_020547654.1
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  *||-|=|||||||||||||||||||
targets:4338   UAGACUUUGUUCGUUUGUGUCGGAU   4362

0.0 PREDICTED: Zea mays uncharacterized LOC100279517 (LOC100279517), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020550140.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675573.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|=||||||||||||||*|||||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548712.1
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2054   AAGACCUUGUUCGUUUGUGCCGGAU   2078

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008672661.2
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2136   AAGACCUUGUUCGUUUGUGCCGGAU   2160

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548713.1
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2149   AAGACCUUGUUCGUUUGUGCCGGAU   2173

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008672662.2
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2178   AAGACCUUGUUCGUUUGUGCCGGAU   2202

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008672660.2
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2210   AAGACCUUGUUCGUUUGUGCCGGAU   2234

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548714.1
ncRNA:24   UUC-GGAACAAGCAAACACAGCCUA   1
  |||-|||||||||||||||*|||||
targets:2259   AAGACCUUGUUCGUUUGUGCCGGAU   2283

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X5, mRNA NA coding protein psRNATarget
LQ238067.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |||=|*|*||||||||||||||||
targets:2   AAGUCGUUUUCGUUUGUGUCGGAU   25

2.0 Sequence 4062 from Patent EP2985353 NA coding protein psRNATarget
JB166398.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |||=|*|*||||||||||||||||
targets:2   AAGUCGUUUUCGUUUGUGUCGGAU   25

2.0 Sequence 4062 from Patent EP2559767 NA coding protein psRNATarget
HI405937.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |||=|*|*||||||||||||||||
targets:2   AAGUCGUUUUCGUUUGUGUCGGAU   25

2.0 Sequence 4062 from Patent EP2074227 NA coding protein psRNATarget
LQ238062.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2985353 NA coding protein psRNATarget
HI405932.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2074227 NA coding protein psRNATarget
JB166393.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2559767 NA coding protein psRNATarget
LQ239368.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2985353 NA coding protein psRNATarget
HI407238.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2074227 NA coding protein psRNATarget
JB167699.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||||*|||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2559767 NA coding protein psRNATarget
EZ050562.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*||||||||||||*|||||||
targets:47   AGGGCUUGUUCGUUUGCGUCGGAU   70

1.5 TSA: Zea mays contig51682, mRNA sequence NA coding protein psRNATarget
NM_001174739.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*|*|||||||||||||=||||
targets:910   AGGGCAUGUUCGUUUGUGUUGGAU   933

2.5 Zea mays uncharacterized LOC100381966 (LOC100381966), mRNA NA coding protein psRNATarget
BT062764.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |=|*|*|||||||||||||=||||
targets:910   AGGGCAUGUUCGUUUGUGUUGGAU   933

2.5 Zea mays full-length cDNA clone ZM_BFb0343N04 mRNA, complete cds NA coding protein psRNATarget
XM_008676824.2
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  |||*|*|||||||||||||||*||
targets:816   AAGACAUGUUCGUUUGUGUCGAAU   839

2.5 PREDICTED: Zea mays Nuclear protein (LOC103651203), mRNA NA coding protein psRNATarget
AY107839.1
ncRNA:24   UUCGGAACAAGCAAACACAGCCUA   1
  *||*||||||||||||||*||||*
targets:1176   UAGGCUUGUUCGUUUGUGCCGGAN   1199

2.5 Zea mays PCO143146 mRNA sequence NA coding protein psRNATarget
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