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BaseInfo

ncRNA ID novel_zma_miR4679
Species Zea mays
Class miRNA
Genome position Chr2:74388281-74388359 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 1 - AUUUUAGCCCCUCCAAUCCUCUCC - 24
Stem-loop(if miRNA) -A    A         A       -   A        CAA
  AGGG AUUGGAGGG CUAAAAU CCC UUCUUAUU   U
  |||| ||||||||| ||||||| ||| ||||||||
  UCUC UAACCUCCC GAUUUUA GGG AGGAAUAA   U
CC    C         C       A   -        AUU
Stem-loop sequence AAGGGAAUUGGAGGGACUAAAAUCCCAUUCUUAUUCAAUUUUAAAUAAGGAGGGAAUUUUAGCCCCUCCAAUCCUCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550478.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||||||||||||||||||||||
targets:2104   GGAGAGGAUUGGAGGGGCUAAAAU   2127

0.0 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
XM_008664337.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||=||=||||||||||||=|||
targets:2032   GGAGGGGGUUGGAGGGGCUAGAAU   2055

2.5 PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA NA coding protein psRNATarget
EU944975.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||*|||||||||||||||=|||
targets:747   GGAGUGGAUUGGAGGGGCUAGAAU   770

1.5 Zea mays clone 236700 mRNA sequence NA coding protein psRNATarget
XM_008651784.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||=|||||*|||||||||||||
targets:675   GGAGGGGAUUAGAGGGGCUAAAAU   698

1.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008651781.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||=|||||*|||||||||||||
targets:675   GGAGGGGAUUAGAGGGGCUAAAAU   698

1.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008651780.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||=|||||*|||||||||||||
targets:675   GGAGGGGAUUAGAGGGGCUAAAAU   698

1.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651782.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||=|||||*|||||||||||||
targets:675   GGAGGGGAUUAGAGGGGCUAAAAU   698

1.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543912.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||=|||||||||||||||||||
targets:4067   GAAGGGGAUUGGAGGGGCUAAAAU   4090

0.0 PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA NA coding protein psRNATarget
LQ238903.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=|||||||||||||||||*|
targets:10   UGAGGGGAUUGGAGGGGCUAAAUU   33

1.5 Sequence 4898 from Patent EP2985353 NA coding protein psRNATarget
HI406773.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=|||||||||||||||||*|
targets:10   UGAGGGGAUUGGAGGGGCUAAAUU   33

1.5 Sequence 4898 from Patent EP2074227 NA coding protein psRNATarget
JB167234.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=|||||||||||||||||*|
targets:10   UGAGGGGAUUGGAGGGGCUAAAUU   33

1.5 Sequence 4898 from Patent EP2559767 NA coding protein psRNATarget
X70154.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||-|||||||||||||||=|||
targets:210   GGAG-GGAUUGGAGGGGCUAGAAU   232

1.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152) NA coding protein psRNATarget
NM_001111958.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||-|||||||||||||||=|||
targets:1032   GGAG-GGAUUGGAGGGGCUAGAAU   1054

1.5 Zea mays protein b-32 (O6), mRNA NA coding protein psRNATarget
X54212.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||-|||||||||||||||=|||
targets:1032   GGAG-GGAUUGGAGGGGCUAGAAU   1054

1.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120) NA coding protein psRNATarget
XM_008662350.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  ||||-||=||||||||||||||||
targets:5225   GGAG-GGGUUGGAGGGGCUAAAAU   5247

1.0 PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA NA coding protein psRNATarget
AY109096.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=|||||||||||||||||*|
targets:2216   UGAGGGGAUUGGAGGGGCUAAAUU   2239

1.5 Zea mays PCO119715 mRNA sequence NA coding protein psRNATarget
EZ081804.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||=|*|||||||||||||||||
targets:19   GAAGGGUAUUGGAGGGGCUAAAAU   42

1.0 TSA: Zea mays contig17445, mRNA sequence NA coding protein psRNATarget
BT065170.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=||=||||||||*|||||||
targets:624   AGAGGGGGUUGGAGGGACUAAAAU   647

2.5 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008670893.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=||=||||||||*|||||||
targets:1504   AGAGGGGGUUGGAGGGACUAAAAU   1527

2.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=||=||||||||*|||||||
targets:1524   AGAGGGGGUUGGAGGGACUAAAAU   1547

2.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=||=||||||||*|||||||
targets:1548   AGAGGGGGUUGGAGGGACUAAAAU   1571

2.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=||=||||||||*|||||||
targets:1581   AGAGGGGGUUGGAGGGACUAAAAU   1604

2.5 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
EZ062925.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  **||=||||||*||||||||||||
targets:108   CAAGGGGAUUGAAGGGGCUAAAAU   131

1.5 TSA: Zea mays contig64047, mRNA sequence NA coding protein psRNATarget
XM_008667867.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||=|||||||||||*|||||||
targets:971   GAAGGGGAUUGGAGGGACUAAAAU   994

1.5 PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA NA coding protein psRNATarget
XM_020544327.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |||*=*||||||||||||||||||
targets:4550   GGAUGUGAUUGGAGGGGCUAAAAU   4573

1.0 PREDICTED: Zea mays putative disease resistance protein RGA3 (LOC103638075), transcript variant X1, mRNA NA coding protein psRNATarget
EU956908.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  *|||=*||||||||*|||||||||
targets:1004   AGAGGAGAUUGGAGAGGCUAAAAU   1027

2.5 Zea mays clone 1577150 mRNA sequence NA coding protein psRNATarget
BT034839.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||||||||*|||||*|||||||
targets:1321   GAAGAGGAUUAGAGGGACUAAAAU   1344

2.5 Zea mays full-length cDNA clone ZM_BFb0022H05 mRNA, complete cds NA coding protein psRNATarget
NM_001137967.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||||||||*|||||*|||||||
targets:1321   GAAGAGGAUUAGAGGGACUAAAAU   1344

2.5 Zea mays uncharacterized LOC100192771 (AY111680), mRNA NA coding protein psRNATarget
EU960786.1
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||||||||*|||||*|||||||
targets:1234   GAAGAGGAUUAGAGGGACUAAAAU   1257

2.5 Zea mays clone 228656 mRNA sequence NA coding protein psRNATarget
XM_008683144.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  |*||||||||*|||||*|||||||
targets:1291   GAAGAGGAUUAGAGGGACUAAAAU   1314

2.5 PREDICTED: Zea mays Synaptotagmin-2 (AY111680), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647699.2
ncRNA:24   CCUCUCCUAACCUCCCCGAUUUUA   1
  **|*||||||||||*|||||||||
targets:1814   AAAUAGGAUUGGAGAGGCUAAAAU   1837

1.5 PREDICTED: Zea mays calcium uptake protein, mitochondrial (LOC103627407), mRNA NA coding protein psRNATarget
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