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BaseInfo

ncRNA ID	novel_zma_miR4670
Species	Zea mays
Class	miRNA
Genome position	Chr7:158278469-158278581 [+]
Reference genome	RefGen_v4
Source	SRR2287162;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866
Length	24
Mature sequence(if miRNA)	90 - GAGGUUGGCCUCGGGCGAGACGGA - 113
Stem-loop(if miRNA)	--  -            UG       GU A  U GA    CA      --A      GU   CG CUCGUCCGAGGU  GCCUCGG  G GA G  ACUG  UCUCUC   UCCGAG  U   || ||||||||||||  |||||||  | || |  ||||  ||||||   ||||||   GC GAGCGGGCUCCG  UGGAGUC  C CU C  UGAC  AGGGAG   GGGCUC  G AG  A            GU       UG C  - UG    -A      AAC      AG
Stem-loop sequence	CGCUCGUCCGAGGUUGGCCUCGGGUGAGAUGGAACUGCAUCUCUCAUCCGAGGUUGGACUCGGGCAAGAGGGAACAGUGUCUCCCGUCUGAGGUUGGCCUCGGGCGAGACGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||||||||||||| targets:361   UCACGGCUCGCCCGAGGCCAACCUC   385 Target Full Sequence	0.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||=|||||||||| targets:681   UCACGGCUCGCCCGGGGCCAACCUC   705 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||-||||||||||||||||||| targets:761   UCACG-CUCGCCCGAGGCCAACCUC   784 Target Full Sequence	0.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **||*||||=|||||||||||||| targets:840   CACGACUCGUCCGAGGCCAACCUC   863 Target Full Sequence	1.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*||||||||=|||||||||| targets:879   UCAUGACUCGCCCGGGGCCAACCUC   903 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*|||||=||||||||||||= targets:481   UCACGGCUCGCUCGAGGCCAACCUU   505 Target Full Sequence	2.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||=|=|||||||||||| targets:241   UCACGGCUCGUCUGAGGCCAACCUC   265 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*|||||||||||||||||*| targets:321   UCACGGCUCGCCCGAGGCCAACCCC   345 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGG---CAGAGCGGGCUCCGGUUGGAG   1   |=|---|-||||||=|||||||||||| targets:560   UUCACAG-CUCGCCUGAGGCCAACCUC   585 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   |*||*|||||||||||||||||*| targets:920   UACGACUCGCCCGAGGCCAACCCC   943 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **||*||=|==||||||||||||| targets:522   CACGGCUUGUUCGAGGCCAACCUC   545 Target Full Sequence	3.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||=||||||||||||||*| targets:641   UCACGGCUUGCCCGAGGCCAACCCC   665 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*|||||||||||||||||*| targets:441   UCAUGGCUCGCCCGAGGCCAACCCC   465 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **|**||=|||||||||||||||| targets:162   CACAGCUUGCCCGAGGCCAACCUC   185 Target Full Sequence	1.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||=|||||*|||||||| targets:201   UCACGGCUCGUCCGAGACCAACCUC   225 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
XM_008661501.2	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||||||=|||||| targets:2917   UCACGGCUCGCCCGAGGCUAACCUC   2941 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA	NA	coding protein	psRNATarget
XM_008661501.2	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*||||||||||||||*|||| targets:2877   UCAUGACUCGCCCGAGGCCACCCUC   2901 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA	NA	coding protein	psRNATarget
XM_020539680.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   |*|||=|||||||||*|||||||| targets:797   UACGUUUCGCCCGAGCCCAACCUC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA	NA	coding protein	psRNATarget