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BaseInfo

ncRNA ID	novel_zma_miR4669
Species	Zea mays
Class	miRNA
Genome position	Chr1:176355005-176355154 [+]
Reference genome	RefGen_v4
Source	SRR2287162;SRR2287163;SRR5451003;SRR5451006
Length	24
Mature sequence(if miRNA)	127 - AAAGACGUUAGAUCUAAGAUGGAU - 150
Stem-loop(if miRNA)	--      A             A        C             --A      CC    -----       -A  AGG   CUAUCU AGAUCUAACGUCU UGAUUGCU UGUAUAUUUUGCA   AAUGCC  UCCA     GCCUCCA  GC   G   |||||| ||||||||||||| |||||||| |||||||||||||   ||||||  ||||     |||||||  ||   U   GGUAGA UCUAGAUUGCAGA ACUAACGA ACAUAUAAAACGU   UUGUGG  AGGU     UGGAGGU  UG   A UA      A             A        U             GUA      -A    GACAA       AG  AAC
Stem-loop sequence	CUAUCUAAGAUCUAACGUCUAUGAUUGCUCUGUAUAUUUUGCAAAAUGCCCCUCCAGCCUCCAAGCAGGGUACAAGUGAUGGAGGUAACAGUGGAAGGUGUUAUGUGCAAAAUAUACAUAGCAAUCAAAGACGUUAGAUCUAAGAUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008679080.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=||||||||||||||||| targets:2027   ACUCAUUUUAGAUCUAACGUCUUU   2050 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008679083.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=||||||||||||||||| targets:2018   ACUCAUUUUAGAUCUAACGUCUUU   2041 Target Full Sequence	1.0	PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT018927.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=||||||||||||||||| targets:1050   ACUCAUUUUAGAUCUAACGUCUUU   1073 Target Full Sequence	1.0	Zea mays clone Contig55.F mRNA sequence	NA	coding protein	psRNATarget
BT087938.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=||||||||||||||||| targets:870   ACUCAUUUUAGAUCUAACGUCUUU   893 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT037068.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=||||||||||||||||| targets:905   ACUCAUUUUAGAUCUAACGUCUUU   928 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds	NA	coding protein	psRNATarget
JB163743.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAAA   1   |||------|||=||||||||||||||||| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	1.0	Sequence 1407 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235412.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAAA   1   |||------|||=||||||||||||||||| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	1.0	Sequence 1407 from Patent EP2985353	NA	coding protein	psRNATarget
HI403282.1	ncRNA:24   UAG------GUAGAAUCUAGAUUGCAGAAA   1   |||------|||=||||||||||||||||| targets:14   AUCACCGCUCAUUUUAGAUCUAACGUCUUU   43 Target Full Sequence	1.0	Sequence 1407 from Patent EP2074227	NA	coding protein	psRNATarget
BT016456.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*||*||||||||||||||||||| targets:45   ACCCUUCUUAGAUCUAACGUCUUU   68 Target Full Sequence	0.0	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget
XM_008664116.2	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*==||||||||||||||||||*| targets:680   ACUUAUCUUAGAUCUAACGUCUCU   703 Target Full Sequence	1.5	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:342   ACUCAUUUUAGAUCUAACGUCUCU   365 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UAGGUAGAAUCUAGAUUGCAGAAA   1   |*=|||=|||||||||||||||*| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.5	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
EU948462.1	ncRNA:24   UA--GGUAGAAUCUAGAUUGCAGAAA   1   ||--==||=|||||||||||||||*| targets:437   AUACUUAUUUUAGAUCUAACGUCUAU   462 Target Full Sequence	2.5	Zea mays clone 377988 mRNA sequence	NA	coding protein	psRNATarget