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BaseInfo

ncRNA ID	novel_zma_miR4657
Species	Zea mays
Class	miRNA
Genome position	Chr10:149712892-149712975 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	61 - CGGAGAGGAUUGGAGGGGCUAAAA - 84
Stem-loop(if miRNA)	--C    A                   C  -   C       A    GGAG GGAUUGGAGGGGCUAAAAU UC CUC UUAUUUA U    |||| ||||||||||||||||||| || ||| |||||||    CCUC CCUAACUUCUCCGAUUUUA AG GAG AAUAAGU U UGA    C                   -  U   U       U
Stem-loop sequence	CGGAGAGGAUUGGAGGGGCUAAAAUCUCCUCCUUAUUUAAUUUUGAAUAAUGAGUGAAUUUUAGCCUCUUCAAUCCCCUCCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539411.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||||||||||||||||||*||||| targets:3497   UUUUAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||||||||||||||||||*||||| targets:3532   UUUUAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	1.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||||||||||=|||| targets:4124   UUAUAGCCCCUCCAAUCCUUUCCG   4147 Target Full Sequence	1.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:83   UUCUAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:83   UUCUAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:83   UUCUAGCCCCUUCAAUCCUCUCCA   106 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:1036   UUCUAGCCCCUUCAAUCCUCUCCA   1059 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:869   UUCUAGCCCCUUCAAUCCUCUCCA   892 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*||||||||=|||||||||||* targets:869   UUCUAGCCCCUUCAAUCCUCUCCA   892 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   ||*|||||||||||||||*||||| targets:215   UUCUAGCCCCUCCAAUCCACUCCG   238 Target Full Sequence	1.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
BT065170.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   |||||*||||||||||||*||||| targets:681   UUUUAUCCCCUCCAAUCCCCUCCG   704 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   |||||*||||||||||||*||||| targets:1561   UUUUAUCCCCUCCAAUCCCCUCCG   1584 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   |||||*||||||||||||*||||| targets:1581   UUUUAUCCCCUCCAAUCCCCUCCG   1604 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   |||||*||||||||||||*||||| targets:1605   UUUUAUCCCCUCCAAUCCCCUCCG   1628 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   |||||*||||||||||||*||||| targets:1638   UUUUAUCCCCUCCAAUCCCCUCCG   1661 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   *||||*||||||||||||*||||| targets:1028   CUUUAACCCCUCCAAUCCCCUCCG   1051 Target Full Sequence	2.5	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AAAAUCGGGGAGGUUAGGAGAGGC   1   *||*|*||||||||||||||||*| targets:82   CUUAAUCCCCUCCAAUCCUCUCGG   105 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget