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BaseInfo

ncRNA ID	novel_zma_miR4648
Species	Zea mays
Class	miRNA
Genome position	Chr6:50791258-50791358 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AAGCAUCAGUUUCAACGGUCGUCU - 24
Stem-loop(if miRNA)	-ACU      ---      A     ----CUA      AUAAUAUU  GUGACUUUU     GAUCGU   AGCUGA GUUUU       UACAUG        AG         C     ||||||   |||||| |||||       ||||||        ||     CUGGCA   UUGACU CGAAA       AUGUAU        AA         A UCUG      ACU      A     UUAUAUC      -------A  AGAAAAGUU
Stem-loop sequence	ACUGAUCGUAGCUGAAGUUUUCUAUACAUGAUAAUAUUAGGUGACUUUUCAUUGAAAAGAAAAUAUGUACUAUAUUAAAGCAUCAGUUUCAACGGUCGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547954.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   =||||||||||||||||||||=|| targets:664   GGACGACCGUUGAAACUGAUGUUU   687 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547953.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   =||||||||||||||||||||=|| targets:664   GGACGACCGUUGAAACUGAUGUUU   687 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273810 (LOC100273810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550353.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   =||=||||||||||||||=||||| targets:905   GGAUGACCGUUGAAACUGGUGCUU   928 Target Full Sequence	1.5	PREDICTED: Zea mays transcription factor bHLH100-like (LOC103650720), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552698.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   |*||||||||||||||||=||||| targets:141   AUACGACCGUUGAAACUGGUGCUU   164 Target Full Sequence	1.5	PREDICTED: Zea mays signal peptide peptidase-like 4 (LOC103654100), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU949327.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   **||||=||||||||||||||||| targets:214   UAACGAUCGUUGAAACUGAUGCUU   237 Target Full Sequence	1.0	Zea mays clone 401177 mRNA sequence	NA	coding protein	psRNATarget
EZ076153.1	ncRNA:21   GCUGGCAACUUUGACUACGAA   1   ||||||||||||||||||||| targets:1   CGACCGUUGAAACUGAUGCUU   21 Target Full Sequence	0.0	TSA: Zea mays contig11790, mRNA sequence	NA	coding protein	psRNATarget
EU940970.1	ncRNA:24   UCUGCUGGCAACUUUGACUACGAA   1   =||=||||||||||||||*||||| targets:1765   GGAUGACCGUUGAAACUGUUGCUU   1788 Target Full Sequence	1.5	Zea mays clone 1224747 mRNA sequence	NA	coding protein	psRNATarget