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BaseInfo

ncRNA ID novel_zma_miR4646
Species Zea mays
Class miRNA
Genome position Chr6:32656617-32656744 [+]
Reference genome RefGen_v4
Source SRR2287162;SRR2287163
Length 23
Mature sequence(if miRNA) 1 - AAGCUUAUGUCCGACGGCCUCUG - 23
Stem-loop(if miRNA) --                  --C    G   C A          -     AAUA     G  CUA  A
  AAGCUUAUGUCCGACGGC   UCUG CAG C UCGGACAUAA UUUAU    UCCGA GG   GC G
  ||||||||||||||||||   |||| ||| | |||||||||| |||||    ||||| ||   ||
  UUCGAAUACAGGCUGCCG   AGAC GUC G AGCCUGUAUU GAAUA    AGGCU CC   CG G
UA                  AAC    G   A C          C     ---C     G  --A  C
Stem-loop sequence AAGCUUAUGUCCGACGGCCUCUGGCAGCCAUCGGACAUAAUUUAUAAUAUCCGAGGGCUAGCAGGCGCACCGUCGGACAUAAGCUUAUGUCCGACGACUGGCAGACAAGCCGUCGGACAUAAGCUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ239089.1
ncRNA:23   GUCUCCGGCAGCCUGUAUUCGAA   1
  *|*|*|||||||||||||||||*
targets:36   GAUAAGCCGUCGGACAUAAGCUC   58

2.0 Sequence 5084 from Patent EP2985353 NA coding protein psRNATarget
LQ239089.1
ncRNA:19   CCGGCAGCCUGUAUUCGAA   1
  ||*||||||||||||||||
targets:1   GGACGUCGGACAUAAGCUU   19

1.0 Sequence 5084 from Patent EP2985353 NA coding protein psRNATarget
JB167420.1
ncRNA:23   GUCUCCGGCAGCCUGUAUUCGAA   1
  *|*|*|||||||||||||||||*
targets:36   GAUAAGCCGUCGGACAUAAGCUC   58

2.0 Sequence 5084 from Patent EP2559767 NA coding protein psRNATarget
JB167420.1
ncRNA:19   CCGGCAGCCUGUAUUCGAA   1
  ||*||||||||||||||||
targets:1   GGACGUCGGACAUAAGCUU   19

1.0 Sequence 5084 from Patent EP2559767 NA coding protein psRNATarget
HI406959.1
ncRNA:23   GUCUCCGGCAGCCUGUAUUCGAA   1
  *|*|*|||||||||||||||||*
targets:36   GAUAAGCCGUCGGACAUAAGCUC   58

2.0 Sequence 5084 from Patent EP2074227 NA coding protein psRNATarget
HI406959.1
ncRNA:19   CCGGCAGCCUGUAUUCGAA   1
  ||*||||||||||||||||
targets:1   GGACGUCGGACAUAAGCUU   19

1.0 Sequence 5084 from Patent EP2074227 NA coding protein psRNATarget
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