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BaseInfo

ncRNA ID novel_zma_miR4643
Species Zea mays
Class miRNA
Genome position Chr2:160873640-160873710 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR1618883;SRR5100255;SRR5105963
Length 24
Mature sequence(if miRNA) 48 - AACUGUAGUAUUUUAAACUGUGGU - 71
Stem-loop(if miRNA) --   UG    A   U  --    UG    UG  AU
  AAC  UAGU UUU AA  ACUG  GUAU  UC  G
  |||  |||| ||| ||  ||||  ||||  ||  A
  UUG  GUCG AAA UU  UGAU  UAUA  AG  G
UU   GU    A   C  UA    GU    UA  AU
Stem-loop sequence AACUGUAGUAUUUUAAACUGUGGUAUUGUCAUGAGUAGAAUAUAUUGUAGUAUUUCAAAAGCUGUGGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ095721.1
ncRNA:24   UGGUGUCAAAUUUUAUGAUGUCAA   1
  ||||||||||||||||*|||||||
targets:4   ACCACAGUUUAAAAUAAUACAGUU   27

1.5 TSA: Zea mays contig31374, mRNA sequence NA coding protein psRNATarget