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BaseInfo

ncRNA ID	novel_zma_miR4641
Species	Zea mays
Class	miRNA
Genome position	Chr6:156934302-156934444 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AUGUGAGAGGCUGUAAAAGAUGGU - 24
Stem-loop(if miRNA)	---C            A       ACAC        ---- GU     UAA     -A    AAA     -UU   A     UCUUUUACGGUC CUCAUAU    CCGCUACU    G  CUAUA   AUAGA  GAAA   ACAAA   ACU A     |||||||||||| |||||||    ||||||||    |  |||||   |||||  ||||   |||||   |||     AGAAAAUGUCGG GAGUGUA    GGUGGUGA    C  GGUGU   UGUCU  UUUU   UGUUU   UGG A UGGU            A       ----        ACUU UG     UUA     AG    AAA     UAU   G
Stem-loop sequence	CUCUUUUACGGUCACUCAUAUACACCCGCUACUGGUCUAUAUAAAUAGAAGAAAAAAACAAAUUACUAAAGGGUUAUUUUGUAAAUUUUGAUCUGUAUUUGUGGGUCUUCAAGUGGUGGAUGUGAGAGGCUGUAAAAGAUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654724.2	ncRNA:24   UGGUAGAAAAUGUCGGAGAGUGUA   1   |=|-|||||||||||||||||=|| targets:3122   AUC-UCUUUUACAGCCUCUCAUAU   3144 Target Full Sequence	1.5	PREDICTED: Zea mays flowering time control protein FPA (LOC103633041), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674327.2	ncRNA:24   UGGUAGAAAAUGUCGGAGAGUGUA   1   *|||*|||||=|||||*||||||| targets:1510   CCCAACUUUUGCAGCCCCUCACAU   1533 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100274883 (LOC100274883), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154609.1	ncRNA:24   UGGUAGAAAAUGUCGGAGAGUGUA   1   |*||-|||||=|||*||||||||| targets:1290   AACA-CUUUUGCAGGCUCUCACAU   1312 Target Full Sequence	2.5	Zea mays gibberellin receptor GID1L2 (LOC100281689), mRNA	NA	coding protein	psRNATarget
EU957551.1	ncRNA:24   UGGUAGAAAAUGUCGGAGAGUGUA   1   |*||-|||||=|||*||||||||| targets:1290   AACA-CUUUUGCAGGCUCUCACAU   1312 Target Full Sequence	2.5	Zea mays clone 1597164 gibberellin receptor GID1L2 mRNA, complete cds	NA	coding protein	psRNATarget