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BaseInfo

ncRNA ID novel_zma_miR4639
Species Zea mays
Class miRNA
Genome position Chr5:119827489-119827542 [+]
Reference genome RefGen_v4
Source SRR2287162;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR1997866
Length 24
Mature sequence(if miRNA) 1 - GAGGUUGGCCUCGGGCGAGACGGA - 24
Stem-loop(if miRNA) --     UG         --      GA
  GAGGU  GCCUCGGGC  GAGACG  A
  |||||  |||||||||  ||||||
  CUCCG  UGGAGCUCG  CUCUGC  U
GG     GU         CU      AA
Stem-loop sequence GAGGUUGGCCUCGGGCGAGACGGAAUAACGUCUCUCGCUCGAGGUUGGCCUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*|||||||||||||||||||
targets:361   UCACGGCUCGCCCGAGGCCAACCUC   385

0.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*||||||||=||||||||||
targets:681   UCACGGCUCGCCCGGGGCCAACCUC   705

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||-|||||||||||||||||||
targets:761   UCACG-CUCGCCCGAGGCCAACCUC   784

0.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1
  **||*||||=||||||||||||||
targets:840   CACGACUCGUCCGAGGCCAACCUC   863

1.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-=|*||||||||=||||||||||
targets:879   UCAUGACUCGCCCGGGGCCAACCUC   903

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*|||||=||||||||||||=
targets:481   UCACGGCUCGCUCGAGGCCAACCUU   505

2.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*||||=|=||||||||||||
targets:241   UCACGGCUCGUCUGAGGCCAACCUC   265

2.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*|||||||||||||||||*|
targets:321   UCACGGCUCGCCCGAGGCCAACCCC   345

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AGG---CAGAGCGGGCUCCGGUUGGAG   1
  |=|---|-||||||=||||||||||||
targets:560   UUCACAG-CUCGCCUGAGGCCAACCUC   585

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1
  |*||*|||||||||||||||||*|
targets:920   UACGACUCGCCCGAGGCCAACCCC   943

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1
  **||*||=|==|||||||||||||
targets:522   CACGGCUUGUUCGAGGCCAACCUC   545

3.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*||=||||||||||||||*|
targets:641   UCACGGCUUGCCCGAGGCCAACCCC   665

2.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-=|*|||||||||||||||||*|
targets:441   UCAUGGCUCGCCCGAGGCCAACCCC   465

1.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1
  **|**||=||||||||||||||||
targets:162   CACAGCUUGCCCGAGGCCAACCUC   185

1.0 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
NM_001348352.1
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*||||=|||||*||||||||
targets:201   UCACGGCUCGUCCGAGACCAACCUC   225

2.5 Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA NA coding protein psRNATarget
XM_008661501.2
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-||*||||||||||||=||||||
targets:2917   UCACGGCUCGCCCGAGGCUAACCUC   2941

1.5 PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA NA coding protein psRNATarget
XM_008661501.2
ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1
  ||-=|*||||||||||||||*||||
targets:2877   UCAUGACUCGCCCGAGGCCACCCUC   2901

1.5 PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA NA coding protein psRNATarget
XM_020539680.1
ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1
  |*|||=|||||||||*||||||||
targets:797   UACGUUUCGCCCGAGCCCAACCUC   820

2.5 PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA NA coding protein psRNATarget
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