Search result

BaseInfo

ncRNA ID	novel_zma_miR4632
Species	Zea mays
Class	miRNA
Genome position	Chr5:6572677-6572868 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	169 - AGCAGAGAGUAGAAAGGAUGGAGC - 192
Stem-loop(if miRNA)	--       A   G     AUG -- --      U AUACACAGCUGGGGCUCAUGGCCUCUGGGGCCUUCUCUGGGGUGUGUACAUGCCUUAUGGUUG   AGCAGAG GUA AAAGG   G  A  GCCCUA G                                                               U   ||||||| ||| |||||   |  |  |||||| |   UUGUUUU CAU UUUUU   C  U  GCGUGU A                                                               C GA       A   G     -GU AU GU      - CGAUGUGUGAACUUUGGUCAGAUGGUAGAUCUCGUAACCUAUAAACCUAUGUUUCUAUUUCCU
Stem-loop sequence	AGCAGAGAGUAGAAAGGAUGGAGCCCUAUGAUACACAGCUGGGGCUCAUGGCCUCUGGGGCCUUCUCUGGGGUGUGUACAUGCCUUAUGGUUGUCUCCUUUAUCUUUGUAUCCAAAUAUCCAAUGCUCUAGAUGGUAGACUGGUUUCAAGUGUGUAGCAUGUGCGUGUUACUGUUUUUGUACAUUUUGUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961455.1	ncRNA:24   CGAG--GUAGGAAAGAUGAGAGACGA   1   *|||--|||||*||||*||||||||| targets:1330   CCUCGUCAUCCCUUCUUCUCUCUGCU   1355 Target Full Sequence	2.5	Zea mays clone 235620 mRNA sequence	NA	coding protein	psRNATarget
BT086227.1	ncRNA:24   CGAG--GUAGGAAAGAUGAGAGACGA   1   *|||--|||||*||||*||||||||| targets:1656   CCUCGUCAUCCCUUCUUCUCUCUGCU   1681 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0133O13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157862.2	ncRNA:24   CGAG--GUAGGAAAGAUGAGAGACGA   1   *|||--|||||*||||*||||||||| targets:1682   CCUCGUCAUCCCUUCUUCUCUCUGCU   1707 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284967 (pco091486(738)), mRNA	NA	coding protein	psRNATarget
EU970296.1	ncRNA:24   CGAG--GUAGGAAAGAUGAGAGACGA   1   *|||--|||||*||||*||||||||| targets:1683   CCUCGUCAUCCCUUCUUCUCUCUGCU   1708 Target Full Sequence	2.5	Zea mays clone 343167 protein binding protein mRNA, complete cds	NA	coding protein	psRNATarget