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BaseInfo

ncRNA ID novel_zma_miR4631
Species Zea mays
Class miRNA
Genome position Chr5:44979121-44979280 [-]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 137 - GUUUGGUUGUAGAGUGAACGGAAC - 160
Stem-loop(if miRNA) --                 AC        GC      G   GAGC    --------- UG  -A      G C    UC   UUG
  GUUUGGUUGUAGAGUGA  GGAACGGA  GUGACU UGA    GGGA         U  GA  CGGAGC G UCCG  CCA   A
  |||||||||||||||||  ||||||||  |||||| |||    ||||         |  ||  |||||| | ||||  |||   U
  CAAACCAAUGUUUCAUU  UCUUGCCU  UACUGA GUU    CCCU         A  CU  GCCUUG U AGGC  GGU   U
AA                 GA        --      G   -AAU    UAUAAGAGG GU  AG      G A    GA   UUU
Stem-loop sequence GUUUGGUUGUAGAGUGAACGGAACGGAGCGUGACUGUGAGAGCGGGAUUGGAACGGAGCGGCUCCGUCCCAUUGAUUUUUUGGAGCGGAAUGGUUCCGGAUCUGAGGAGAAUAUUCCCUAAUUGGAGUCAUUCCGUUCUAGUUACUUUGUAACCAAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020542520.1
ncRNA:24   CAAGGCAAGUGAGAUGUUGGUUUG   1
  *|||||||||||||=|||||||||
targets:1667   AUUCCGUUCACUCUGCAACCAAAC   1690

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 38 (LOC100502147), transcript variant X2, mRNA NA coding protein psRNATarget