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BaseInfo

ncRNA ID	novel_zma_miR4625
Species	Zea mays
Class	miRNA
Genome position	Chr5:136942699-136942753 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	21
Mature sequence(if miRNA)	1 - UAAAAGUUGUUGGAUUAUAUA - 21
Stem-loop(if miRNA)	--                        A   UAUAAUUCAACAAUUUUUGAACUA G   |||||||||||||||||||||||| U   AUAUUAGGUUGUUGAAAAUUUGGU G AU                        U
Stem-loop sequence	UAUAAUUCAACAAUUUUUGAACUAAGUGUUGGUUUAAAAGUUGUUGGAUUAUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547943.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   ||||||||||||||||||||| targets:3367   UAUAUAAUCCAACAACUUUUA   3387 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   ||||||||||||||||||||| targets:3352   UAUAUAAUCCAACAACUUUUA   3372 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   ||||||||||||||||||||| targets:3223   UAUAUAAUCCAACAACUUUUA   3243 Target Full Sequence	0.0	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   ||||||||||||||||||||| targets:1238   UAUAUAAUCCAACAACUUUUA   1258 Target Full Sequence	0.0	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   ||||||||||||||||||||| targets:1238   UAUAUAAUCCAACAACUUUUA   1258 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget
HI407056.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   |||||||||=||||||||||= targets:30   UAUAUAAUCUAACAACUUUUG   50 Target Full Sequence	2.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
JB167517.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   |||||||||=||||||||||= targets:30   UAUAUAAUCUAACAACUUUUG   50 Target Full Sequence	2.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   |||||||||=||||||||||= targets:30   UAUAUAAUCUAACAACUUUUG   50 Target Full Sequence	2.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
EZ106279.1	ncRNA:21   AUAUAUUAGGUUGUUGAAAAU   1   **|=|||||||*||||||||| targets:18   CUUGUAAUCCACCAACUUUUA   38 Target Full Sequence	2.5	TSA: Zea mays contig41937, mRNA sequence	NA	coding protein	psRNATarget