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BaseInfo

ncRNA ID novel_zma_miR4623
Species Zea mays
Class miRNA
Genome position Chr2:216809546-216809617 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 21
Mature sequence(if miRNA) 1 - AUUUUAGCCCCUCCAAUCUCC - 21
Stem-loop(if miRNA) --     AA  AU                      A
  GGAUU  AG  GCUAAAAUCUCCUUCUUAUUCA A
  |||||  ||  ||||||||||||||||||||||
  UCUAA  UC  CGAUUUUAGGGGAGGAAUAAGU A
CC     CC  CC                      U
Stem-loop sequence GGAUUAAAGAUGCUAAAAUCUCCUUCUUAUUCAAAAUUGAAUAAGGAGGGGAUUUUAGCCCCUCCAAUCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020543912.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||||||||||
targets:4070   GGGGAUUGGAGGGGCUAAAAU   4090

1.0 PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA NA coding protein psRNATarget
EU956908.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |||||||||||*|||||||||
targets:1007   GGAGAUUGGAGAGGCUAAAAU   1027

1.5 Zea mays clone 1577150 mRNA sequence NA coding protein psRNATarget
XM_020550478.1
ncRNA:21   CCUCU---AACCUCCCCGAUUUUA   1
  |||||---||||||||||||||||
targets:2104   GGAGAGGAUUGGAGGGGCUAAAAU   2127

3.0 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
XM_020544327.1
ncRNA:21   CCU---CUAACCUCCCCGAUUUUA   1
  |||---||||||||||||||||||
targets:4550   GGAUGUGAUUGGAGGGGCUAAAAU   4573

3.0 PREDICTED: Zea mays putative disease resistance protein RGA3 (LOC103638075), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238903.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||||||||*|
targets:13   GGGGAUUGGAGGGGCUAAAUU   33

2.5 Sequence 4898 from Patent EP2985353 NA coding protein psRNATarget
HI406773.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||||||||*|
targets:13   GGGGAUUGGAGGGGCUAAAUU   33

2.5 Sequence 4898 from Patent EP2074227 NA coding protein psRNATarget
JB167234.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||||||||*|
targets:13   GGGGAUUGGAGGGGCUAAAUU   33

2.5 Sequence 4898 from Patent EP2559767 NA coding protein psRNATarget
EZ062925.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=|||||*||||||||||||
targets:111   GGGGAUUGAAGGGGCUAAAAU   131

2.5 TSA: Zea mays contig64047, mRNA sequence NA coding protein psRNATarget
X70154.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *|=||||||||||||||=|||
targets:212   AGGGAUUGGAGGGGCUAGAAU   232

2.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.152) NA coding protein psRNATarget
EZ081804.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=*|||||||||||||||||
targets:22   GGGUAUUGGAGGGGCUAAAAU   42

2.0 TSA: Zea mays contig17445, mRNA sequence NA coding protein psRNATarget
NM_001111958.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *|=||||||||||||||=|||
targets:1034   AGGGAUUGGAGGGGCUAGAAU   1054

2.5 Zea mays protein b-32 (O6), mRNA NA coding protein psRNATarget
X54212.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *|=||||||||||||||=|||
targets:1034   AGGGAUUGGAGGGGCUAGAAU   1054

2.5 Z.mays mRNA for b-32 protein, putative regulatory factor of zein expression (clone b-32.120) NA coding protein psRNATarget
XM_008662350.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *|=|=||||||||||||||||
targets:5227   AGGGGUUGGAGGGGCUAAAAU   5247

2.0 PREDICTED: Zea mays paramyosin (LOC103639615), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008667867.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||*|||||||
targets:974   GGGGAUUGGAGGGACUAAAAU   994

2.5 PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA NA coding protein psRNATarget
AY109096.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||||||||||||||*|
targets:2219   GGGGAUUGGAGGGGCUAAAUU   2239

2.5 Zea mays PCO119715 mRNA sequence NA coding protein psRNATarget
XM_008651784.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||*|||||||||||||
targets:678   GGGGAUUAGAGGGGCUAAAAU   698

2.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008651781.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||*|||||||||||||
targets:678   GGGGAUUAGAGGGGCUAAAAU   698

2.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008651780.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||*|||||||||||||
targets:678   GGGGAUUAGAGGGGCUAAAAU   698

2.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651782.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  ||=||||*|||||||||||||
targets:678   GGGGAUUAGAGGGGCUAAAAU   698

2.0 PREDICTED: Zea mays probable E3 ubiquitin-protein ligase HIP1 (LOC103630734), transcript variant X3, mRNA NA coding protein psRNATarget
EU944463.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:459   UGACAUUGGAGGGGCUAAAGU   479

2.5 Zea mays clone 219466 mRNA sequence NA coding protein psRNATarget
BT038504.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:852   UGAUAUUGGAGGGGCUAAAGU   872

2.5 Zea mays full-length cDNA clone ZM_BFb0280P03 mRNA, complete cds NA coding protein psRNATarget
NM_001165427.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:1625   UGAUAUUGGAGGGGCUAAAGU   1645

2.5 Zea mays uncharacterized LOC100303793 (LOC100303793), mRNA NA coding protein psRNATarget
BT039656.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:1625   UGAUAUUGGAGGGGCUAAAGU   1645

2.5 Zea mays full-length cDNA clone ZM_BFc0037G03 mRNA, complete cds NA coding protein psRNATarget
NM_001150313.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:1645   UGACAUUGGAGGGGCUAAAGU   1665

2.5 Zea mays hypothetical protein (LOC100276552), mRNA NA coding protein psRNATarget
EU963199.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:1645   UGACAUUGGAGGGGCUAAAGU   1665

2.5 Zea mays clone 258960 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY103663.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  *||*|||||||||||||||=|
targets:1695   UGAUAUUGGAGGGGCUAAAGU   1715

2.5 Zea mays PCO090448 mRNA sequence NA coding protein psRNATarget
EZ066710.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |*|||||||||||||*|||||
targets:2   GCAGAUUGGAGGGGCCAAAAU   22

1.5 TSA: Zea mays contig02344, mRNA sequence NA coding protein psRNATarget
XM_008674728.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |||||*|*|||||||||||||
targets:645   GGAGAGUUGAGGGGCUAAAAU   665

2.0 PREDICTED: Zea mays 60S ribosomal protein L18A (LOC100284168), transcript variant X1, mRNA NA coding protein psRNATarget
BT065189.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |*|||||||||||||*|||||
targets:875   GCAGAUUGGAGGGGCCAAAAU   895

1.5 Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds NA coding protein psRNATarget
EU965698.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |*|||||||||||||*|||||
targets:996   GCAGAUUGGAGGGGCCAAAAU   1016

1.5 Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds NA coding protein psRNATarget
NM_001156624.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |*|||||||||||||*|||||
targets:996   GCAGAUUGGAGGGGCCAAAAU   1016

1.5 Zea mays uncharacterized LOC100283725 (gpm911), mRNA NA coding protein psRNATarget
XM_020553374.1
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |*|||||||||||||*|||||
targets:1203   GCAGAUUGGAGGGGCCAAAAU   1223

1.5 PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669125.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |||||||*|||||*|||||||
targets:53   GGAGAUUAGAGGGACUAAAAU   73

2.5 PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669124.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  |||||||*|||||*|||||||
targets:53   GGAGAUUAGAGGGACUAAAAU   73

2.5 PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647699.2
ncRNA:21   CCUCUAACCUCCCCGAUUUUA   1
  **=||||||||*|||||||||
targets:1817   UAGGAUUGGAGAGGCUAAAAU   1837

2.5 PREDICTED: Zea mays calcium uptake protein, mitochondrial (LOC103627407), mRNA NA coding protein psRNATarget
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