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BaseInfo

ncRNA ID	novel_zma_miR4620
Species	Zea mays
Class	miRNA
Genome position	Chr5:22201771-22201943 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	21
Mature sequence(if miRNA)	153 - GUCAAAAUCGUCAAUUCACCC - 173
Stem-loop(if miRNA)	--                 C    AG       C    UUAGU        CU                C      A        UAAA   GUGAAUUGACGAUUUUG CCCU  GUGGAAA UGAA     GCAGAGUU  GUUUGUCUAUGUUUAG UUUGAG AAUAUUUU    C   ||||||||||||||||| ||||  ||||||| ||||     ||||||||  |||||||||||||||| |||||| ||||||||   CACUUAACUGCUAAAAC GGGA  CACUUUU ACUU     UGUCUCGG  CAAGCAGAUACGAGUU AAACUC UUAUAAAG    C CC                 U    CU       U    -----        AU                A      C        UGUA
Stem-loop sequence	GUGAAUUGACGAUUUUGCCCCUAGGUGGAAACUGAAUUAGUGCAGAGUUCUGUUUGUCUAUGUUUAGCUUUGAGAAAUAUUUUUAAACCAUGUGAAAUAUUCCUCAAAAUUGAGCAUAGACGAACUAGGCUCUGUUUCAUUUUUCACUCAGGGUCAAAAUCGUCAAUUCACCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052505.1	ncRNA:21   CCCACUUAACUGCUAAAACUG   1   ***||||||||*||||||||| targets:90   CAAUGAAUUGAAGAUUUUGAC   110 Target Full Sequence	2.5	TSA: Zea mays contig53626, mRNA sequence	NA	coding protein	psRNATarget
XM_020540524.1	ncRNA:21   CCCACUUAACUGCUAAAACUG   1   ***||||||||*||||||||| targets:1142   CAAUGAAUUGAAGAUUUUGAC   1162 Target Full Sequence	2.5	PREDICTED: Zea mays lysM receptor-like kinase (LOC100281614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540523.1	ncRNA:21   CCCACUUAACUGCUAAAACUG   1   ***||||||||*||||||||| targets:1148   CAAUGAAUUGAAGAUUUUGAC   1168 Target Full Sequence	2.5	PREDICTED: Zea mays lysM receptor-like kinase (LOC100281614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957250.1	ncRNA:21   CCCACUUAACUGCUAAAACUG   1   ***||||||||*||||||||| targets:1295   CAAUGAAUUGAAGAUUUUGAC   1315 Target Full Sequence	2.5	Zea mays clone 1587072 lysM receptor-like kinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154533.1	ncRNA:21   CCCACUUAACUGCUAAAACUG   1   ***||||||||*||||||||| targets:1295   CAAUGAAUUGAAGAUUUUGAC   1315 Target Full Sequence	2.5	Zea mays lysM receptor-like kinase (LOC100281614), mRNA	NA	coding protein	psRNATarget