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BaseInfo

ncRNA ID	novel_zma_miR4609
Species	Zea mays
Class	miRNA
Genome position	Chr5:183682318-183682418 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	78 - CGCGGGGUAGGAGGAGGCGGAAGU - 101
Stem-loop(if miRNA)	--    C  -  A         A   CG     GAA   - -G    -A    G   UUCU CC CC CCUGCCUCG UGC  GCGAC   GCA C  CCGG  UUGA G   |||| || || ||||||||| |||  |||||   ||| |  ||||  ||||   AAGG GG GG GGAUGGGGC GCG  CGCUG   UGU G  GGCC  GGCU G UG    C  A  A         -   AU     --A   A AG    CC    C
Stem-loop sequence	UUCUCCCCCACCUGCCUCGAUGCCGGCGACGAAGCACGCCGGAUUGAGGGCUCGGCCCCGGGAGAUGUAGUCGCUAGCGCGGGGUAGGAGGAGGCGGAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543164.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   |||||||||||||||||||*|||| targets:80   ACUUCCGCCUCCUCCUACCGCGCG   103 Target Full Sequence	1.5	PREDICTED: Zea mays E3 ubiquitin ligase BIG BROTHER-related-like (LOC103645175), mRNA	NA	coding protein	psRNATarget
XM_008660954.2	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   |||||||||||||||||||*|||| targets:260   ACUUCCGCCUCCUCCUACCGCGCG   283 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660953.2	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   |||||||||||||||||||*|||| targets:260   ACUUCCGCCUCCUCCUACCGCGCG   283 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546417.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   |||||||||||||||||||*|||| targets:57   ACUUCCGCCUCCUCCUACCGCGCG   80 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized WD repeat-containing protein alr3466-like (LOC103637587), mRNA	NA	coding protein	psRNATarget
EU943639.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   ||||||||*||||||||||||||| targets:1326   ACUUCCGCGUCCUCCUACCCCGCG   1349 Target Full Sequence	1.0	Zea mays clone 1666751 mRNA sequence	NA	coding protein	psRNATarget
XM_020540296.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   ||||||||*||||||||||||||| targets:610   ACUUCCGCGUCCUCCUACCCCGCG   633 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100192521 (LOC100192521), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176492.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   *|||*=|||||||||||||||*|| targets:2163   CCUUGUGCCUCCUCCUACCCCACG   2186 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383862 (LOC100383862), mRNA	NA	coding protein	psRNATarget
BT068478.2	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   *|||*=|||||||||||||||*|| targets:2163   CCUUGUGCCUCCUCCUACCCCACG   2186 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0221H04 mRNA, complete cds	NA	coding protein	psRNATarget
EU966498.1	ncRNA:24   UGAAGGCGGAGGAGGAUGGGGCGC   1   =**|||||||||||||*||||||* targets:790   GGCUCCGCCUCCUCCUCCCCCGCC   813 Target Full Sequence	2.5	Zea mays clone 294888 mRNA sequence	NA	coding protein	psRNATarget