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BaseInfo

ncRNA ID	novel_zma_miR4603
Species	Zea mays
Class	miRNA
Genome position	Chr4:146333508-146333576 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	46 - CCGGUGAAUUAUAGUGGAGCGGUU - 69
Stem-loop(if miRNA)	--           --GC          -       G   UUGCUCCGCUG    UUACCGGACA GUCCGGU U   |||||||||||    |||||||||| |||||||   GGCGAGGUGAU    AGUGGCCUGU CAGGCCA G UU           AUUA          A       C
Stem-loop sequence	UUGCUCCGCUGGCUUACCGGACAGUCCGGUGUGCACCGGACAUGUCCGGUGAAUUAUAGUGGAGCGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241978.1	ncRNA:24   UU-GGCGAGGUGAUAUUAAGUGGCC   1   ||-|||||||=|||||||||||||| targets:76   AAUCCGCUCCGCUAUAAUUCACCGG   100 Target Full Sequence	1.0	Sequence 7973 from Patent EP2985353	NA	coding protein	psRNATarget
JB170309.1	ncRNA:24   UU-GGCGAGGUGAUAUUAAGUGGCC   1   ||-|||||||=|||||||||||||| targets:76   AAUCCGCUCCGCUAUAAUUCACCGG   100 Target Full Sequence	1.0	Sequence 7973 from Patent EP2559767	NA	coding protein	psRNATarget
HI409848.1	ncRNA:24   UU-GGCGAGGUGAUAUUAAGUGGCC   1   ||-|||||||=|||||||||||||| targets:76   AAUCCGCUCCGCUAUAAUUCACCGG   100 Target Full Sequence	1.0	Sequence 7973 from Patent EP2074227	NA	coding protein	psRNATarget
BT042818.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==||||||==|||||||||||||| targets:597   GGCCGCUCUGCUAUAAUUCACCGG   620 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==|=|||||=|||||||||||||| targets:689   GGCUGCUCCGCUAUAAUUCACCGG   712 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|*||||=|||||||||||||| targets:583   AGGCACUCCGCUAUAAUUCACCGG   606 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==|=|||||=|||||||||||||| targets:689   GGCUGCUCCGCUAUAAUUCACCGG   712 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|*||||=|||||||||||||| targets:583   AGGCACUCCGCUAUAAUUCACCGG   606 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   UU-GGCGAGGUGAUAUUAAGUGGCC   1   ||-|||||||=||||||||||=||| targets:1268   AAUCCGCUCCGCUAUAAUUCAUCGG   1292 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
BT060603.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|||**|=|||||||||||||| targets:1174   AGGCGCCGCGCUAUAAUUCACCGG   1197 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds	NA	coding protein	psRNATarget
EZ091933.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=|||||||=||||||||||||*| targets:57   AGCCGCUCCGCUAUAAUUCACCCG   80 Target Full Sequence	2.5	TSA: Zea mays contig27582, mRNA sequence	NA	coding protein	psRNATarget
JB170161.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==|=|||||=||||||||||=||| targets:158   GGCUGCUCCGCUAUAAUUCAUCGG   181 Target Full Sequence	2.5	Sequence 7825 from Patent EP2559767	NA	coding protein	psRNATarget
JB170161.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|*|||*=|||||||||||||| targets:52   AGGCACUCAGCUAUAAUUCACCGG   75 Target Full Sequence	2.0	Sequence 7825 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241830.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==|=|||||=||||||||||=||| targets:158   GGCUGCUCCGCUAUAAUUCAUCGG   181 Target Full Sequence	2.5	Sequence 7825 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241830.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|*|||*=|||||||||||||| targets:52   AGGCACUCAGCUAUAAUUCACCGG   75 Target Full Sequence	2.0	Sequence 7825 from Patent EP2985353	NA	coding protein	psRNATarget
HI409700.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ==|=|||||=||||||||||=||| targets:158   GGCUGCUCCGCUAUAAUUCAUCGG   181 Target Full Sequence	2.5	Sequence 7825 from Patent EP2074227	NA	coding protein	psRNATarget
HI409700.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*|*|||*=|||||||||||||| targets:52   AGGCACUCAGCUAUAAUUCACCGG   75 Target Full Sequence	2.0	Sequence 7825 from Patent EP2074227	NA	coding protein	psRNATarget
EU970212.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=*||||||=|||||||||||||| targets:469   AGGCGCUCCGCUAUAAUUCACCGG   492 Target Full Sequence	1.0	Zea mays clone 342257 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT064671.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |=||*||||=|||||||||||||| targets:1073   AGCCACUCCGCUAUAAUUCACCGG   1096 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008J22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548733.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ===||||||=||||||||=||||| targets:1914   GGUCGCUCCGCUAUAAUUUACCGG   1937 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA	NA	coding protein	psRNATarget
BT054293.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   ===||||||=||||||||=||||| targets:1920   GGUCGCUCCGCUAUAAUUUACCGG   1943 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196891.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   |=|-||||||=||||||||||=||| targets:1061   AGCGCGCUCCGCUAUAAUUCAUCGG   1085 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502413 (LOC100502413), mRNA	NA	coding protein	psRNATarget
BT088050.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   |=|-||||||=||||||||||=||| targets:1061   AGCGCGCUCCGCUAUAAUUCAUCGG   1085 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0379I10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650945.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ==|-||||||=|||||||||||||| targets:833   GGCGCGCUCCGCUAUAAUUCACCGG   857 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA	NA	coding protein	psRNATarget
EU952069.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ==|-||||||=|||||||||||||| targets:841   GGCGCGCUCCGCUAUAAUUCACCGG   865 Target Full Sequence	1.0	Zea mays clone 1155789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU948808.1	ncRNA:24   UUGGCGA---GGUGAUAUUAAGUGGCC   1   |||*|||---||||||||||||||||| targets:491   AACGGCUAGUCCACUAUAAUUCACCGG   517 Target Full Sequence	3.0	Zea mays clone 385792 mRNA sequence	NA	coding protein	psRNATarget
EU947420.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   |==|*||||=|||||||||||||| targets:312   AGUCACUCCGCUAUAAUUCACCGG   335 Target Full Sequence	1.0	Zea mays clone 342805 mRNA sequence	NA	coding protein	psRNATarget
XM_020541939.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ==|-=|||||=|||||||||||||| targets:1022   GGCAUGCUCCGCUAUAAUUCACCGG   1046 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541938.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ==|-=|||||=|||||||||||||| targets:1035   GGCAUGCUCCGCUAUAAUUCACCGG   1059 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ078322.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *=|*|||||=|||||||||||||| targets:13   CGCAGCUCCGCUAUAAUUCACCGG   36 Target Full Sequence	1.0	TSA: Zea mays contig13961, mRNA sequence	NA	coding protein	psRNATarget
JB170471.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ||=-||||||=||||||||||||*| targets:85   AAUUCGCUCCGCUAUAAUUCACCAG   109 Target Full Sequence	2.5	Sequence 8135 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242140.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ||=-||||||=||||||||||||*| targets:85   AAUUCGCUCCGCUAUAAUUCACCAG   109 Target Full Sequence	2.5	Sequence 8135 from Patent EP2985353	NA	coding protein	psRNATarget
HI410010.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ||=-||||||=||||||||||||*| targets:85   AAUUCGCUCCGCUAUAAUUCACCAG   109 Target Full Sequence	2.5	Sequence 8135 from Patent EP2074227	NA	coding protein	psRNATarget
EZ112673.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *==||||||=||||||||||||*| targets:46   UGUCGCUCCGCUAUAAUUCACCAG   69 Target Full Sequence	2.5	TSA: Zea mays contig48334, mRNA sequence	NA	coding protein	psRNATarget
XM_020542612.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *|||-||||=||||||||||=||| targets:1228   CACC-CUCCGCUAUAAUUCAUCGG   1250 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657658.2	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *|||-||||=||||||||||=||| targets:1312   CACC-CUCCGCUAUAAUUCAUCGG   1334 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ092215.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *=|*|||||*|||||||||||||| targets:12   CGCAGCUCCUCUAUAAUUCACCGG   35 Target Full Sequence	1.0	TSA: Zea mays contig27864, mRNA sequence	NA	coding protein	psRNATarget
EU959991.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *||*|||||=||*||||||||||| targets:401   CACAGCUCCGCUUUAAUUCACCGG   424 Target Full Sequence	2.5	Zea mays clone 221041 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663618.2	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *||*|||||=||*||||||||||| targets:487   CACAGCUCCGCUUUAAUUCACCGG   510 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA	NA	coding protein	psRNATarget
EZ077288.1	ncRNA:24   UUG-GCGAGGUGAUAUUAAGUGGCC   1   ==|-=|||||=||||||||||||*| targets:24   GGCAUGCUCCGCUAUAAUUCACCAG   48 Target Full Sequence	2.5	TSA: Zea mays contig12925, mRNA sequence	NA	coding protein	psRNATarget
BT064593.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *||=*|||*||||*|||||||||| targets:628   CACUCCUCGACUAAAAUUCACCGG   651 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0188B15 mRNA, complete cds	NA	coding protein	psRNATarget
BT063396.1	ncRNA:24   UUGGCGAGGUGAUAUUAAGUGGCC   1   *||=*|||*||||*|||||||||| targets:2587   CACUCCUCGACUAAAAUUCACCGG   2610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds	NA	coding protein	psRNATarget