A ncRNA database for oil producing plants

Search result

ncRNA ID	osa-miRf10057-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UCCCGGUUGGACAACCGGGACUAAA - NA
Stem-loop(if miRNA)	GA AU C -- --AUA U UGACC UCUUUAGUCCCGGUU UUUA CCGGGACUA AAU GCUA C \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| AUUGG GGAAAUCAGGGCCAA AGGU GGCCCUGAU UUA UGAU U -G -C U AC GACCC U
Stem-loop sequence	UGACCGAUCUUUAGUCCCGGUUAUUUUACCCGGGACUAAAUAUAGCUAUCUUUAGUCCCAGAUUCAUAGUCCCGGUUGGACAACCGGGACUAAAGGGGGUUA

Target Acc

Alignment

Exception

Target Description

Target Gene Name

Target Type

Method

AK242216.1

ncRNA:25	AAAUCAGGGCCAACAGGUUGGCCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|
targets:590	UUUAGUCCCGGUUUUCCAACCGGGA	614

1.5

Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence

coding protein

AK288377.1

ncRNA:25	AAAUCAGGGCCAACAGGUUGGCCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|\|\|
targets:1290	UUUAGUCCCGGUUUUCCAACCGGGA	1314

1.5

Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence

coding protein

AK100339.1

ncRNA:25	AAAUCAGGGCCAACAGGUUGGCCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2033	UUUAAUCCCGGUUUUCCAACCGGGA	2057

1.5

Oryza sativa Japonica Group cDNA clone:J023081I19, full insert sequence

coding protein

XM_015759291.1

ncRNA:25	AAAUCAGGGCCAACAGGUUGGCCCU	1
	\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
targets:2032	UUUAAUCCCGGUUUUCCAACCGGGA	2056

1.5

PREDICTED: Oryza sativa Japonica Group proline-rich receptor-like protein kinase PERK4 (LOC4347953), mRNA

proline-rich receptor-like protein kinase PERK4(LOC4347953)

coding protein

AK121472.1

ncRNA:25	AAAUCAGGGCCAACAGGUUGGCCCU	1
	\|\|-\|\|\|\|\|\|\|\|\|\|*\|\|\|\|\|\|\|\|\|
targets:1385	GUU-GUCCCAGUUGUGCAACCGGGA	1408

2.5

Oryza sativa Japonica Group cDNA clone:J023148H10, full insert sequence

coding protein