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BaseInfo

ncRNA ID	novel_zma_miR4598
Species	Zea mays
Class	miRNA
Genome position	Chr4:71987138-71987251 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AAAGUGAGGAGUGAAAAGAAGAUG - 24
Stem-loop(if miRNA)	---AA            A    A       C C       C             A  A      AGUGAGGAGUGA AAGA GAUGGAU A UUCAUUC UCAAACCAAACAC CU U      |||||||||||| |||| ||||||| | ||||||| ||||||||||||| ||      UCACUCCUCACU UUCU CUACCUG U GAGUAAG AGUUUGGUUUGUG GG U UUUUA            C    A       A C       U             -  A
Stem-loop sequence	AAAGUGAGGAGUGAAAAGAAGAUGGAUCACUUCAUUCCUCAAACCAAACACACUAUUAGGGUGUUUGGUUUGAUGAAUGAGCUAGUCCAUCAUCUUCUCACUCCUCACUAUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068835.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1156   CAUCUUCUUCUCACUCCUCACUUU   1179 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086D12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138281.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1148   CAUCUUCUUCUCACUCCUCACUUU   1171 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100193120), mRNA	NA	coding protein	psRNATarget
BT035296.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1148   CAUCUUCUUCUCACUCCUCACUUU   1171 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0053K15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008668926.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1149   CAUCUUCUUCUCACUCCUCACUUU   1172 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100193120), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088056.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1274   CAUCUUCUUCUCACUCCUCACUUU   1297 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0381E20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656331.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1823   CAUCUUCUUCUCACUCCUCACUUU   1846 Target Full Sequence	1.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656330.2	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||||||||*|||||||||||||| targets:1794   CAUCUUCUUCUCACUCCUCACUUU   1817 Target Full Sequence	1.0	PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC100272998), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971252.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   =|||*||||||||||||||=|||| targets:400   UAUCGUCUUUUCACUCCUCGCUUU   423 Target Full Sequence	1.5	Zea mays clone 360410 mRNA sequence	NA	coding protein	psRNATarget
BT068564.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||*||||*|||||||||||||| targets:77   CAUCGUCUUCUCACUCCUCACUUU   100 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0327N20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547325.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||*||||*|||||||||||||| targets:1056   CAUCAUCUUCUCACUCCUCACUUU   1079 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547324.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||*||||*|||||||||||||| targets:1057   CAUCAUCUUCUCACUCCUCACUUU   1080 Target Full Sequence	1.0	PREDICTED: Zea mays transcription factor MYB31 (myb31), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001155699.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||*||||*|||||=|||||||| targets:915   CAUCAUCUUCUCACUUCUCACUUU   938 Target Full Sequence	2.5	Zea mays transmembrane BAX inhibitor motif-containing protein 4 (LOC100282793), mRNA	NA	coding protein	psRNATarget
EU962334.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||*||||*|||||=|||||||| targets:915   CAUCAUCUUCUCACUUCUCACUUU   938 Target Full Sequence	2.5	Zea mays clone 241846 transmembrane BAX inhibitor motif-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174998.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||=*||||*|||||||||||||| targets:870   CAUUAUCUUCUCACUCCUCACUUU   893 Target Full Sequence	1.0	Zea mays soluble epoxide hydrolase (pco095801), transcript variant 3, mRNA	NA	coding protein	psRNATarget
BT063621.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||=*||||*|||||||||||||| targets:870   CAUUAUCUUCUCACUCCUCACUUU   893 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0086K20 mRNA, complete cds	NA	coding protein	psRNATarget
BT024051.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   ||||||=*|*|||||||||||||| targets:1973   CAUCUUUCUCUCACUCCUCACUUU   1996 Target Full Sequence	3.0	Zea mays clone EL01N0437F11 mRNA sequence	NA	coding protein	psRNATarget
XM_020546133.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   =|||*||||*|||||||||||||| targets:572   UAUCAUCUUCUCACUCCUCACUUU   595 Target Full Sequence	1.0	PREDICTED: Zea mays ubiquitin-activating enzyme E1 3 (LOC103634508), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008664497.2	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   =|||*||||*||||||||||=||| targets:115   UAUCAUCUUCUCACUCCUCAUUUU   138 Target Full Sequence	2.5	PREDICTED: Zea mays F-box protein SKIP19 (LOC103641127), mRNA	NA	coding protein	psRNATarget
BT054365.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||=*||||*||||||||||=||| targets:1180   CAUUAUCUUCUCACUCCUCAUUUU   1203 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0002L04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152506.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   |||=*||||*||||||||||=||| targets:1180   CAUUAUCUUCUCACUCCUCAUUUU   1203 Target Full Sequence	2.5	Zea mays OSJNBb0091E11.19-like protein (LOC100279506), mRNA	NA	coding protein	psRNATarget
EU976791.1	ncRNA:24   GUAGAAGAAAAGUGAGGAGUGAAA   1   =||-|||||*|||||=|||||||| targets:856   UAU-UUCUUCUCACUUCUCACUUU   878 Target Full Sequence	2.5	Zea mays clone 990165 mRNA sequence	NA	coding protein	psRNATarget