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BaseInfo

ncRNA ID novel_zma_miR4592
Species Zea mays
Class miRNA
Genome position Chr1:159582644-159582720 [+]
Reference genome RefGen_v4
Source SRR1618882;SRR5100248
Length 24
Mature sequence(if miRNA) 54 - AUUUGGCAAUUUUAGAACUAAAAU - 77
Stem-loop(if miRNA) --      AUAU                          
  UUUAGU    AAAUUGUUAAAUAUAGAAACUGAAAUA
  ||||||    ||||||||||||||||||||||||||A
  AAAUCA    UUUAACGGUUUAUAUCUUUGAUUUUGA
UA      AGAU                          
Stem-loop sequence UUUAGUAUAUAAAUUGUUAAAUAUAGAAACUGAAAUAAAGUUUUAGUUUCUAUAUUUGGCAAUUUUAGAACUAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ052166.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  |||||||||=||||||||=|||||
targets:798   AUUUUAGUUUUAAAAUUGUCAAAU   821

2.5 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
EU956677.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  ||||||||||*|||||||||||||
targets:2058   AUUUUAGUUCCAAAAUUGCCAAAU   2081

1.0 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  ||||||||||*||||||||=||||
targets:1018   AUUUUAGUUCCAAAAUUGCUAAAU   1041

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
BT036582.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  ||||||||||*||||||*||||||
targets:861   AUUUUAGUUCCAAAAUUUCCAAAU   884

2.5 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  ||||||||||*||||||*||||||
targets:861   AUUUUAGUUCCAAAAUUUCCAAAU   884

2.5 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
EZ060524.1
ncRNA:24   UAAAAUCAAGAUUUUAACGGUUUA   1
  ||||||||||*||||||*||||||
targets:90   AUUUUAGUUCCAAAAUUACCAAAU   113

2.5 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
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