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BaseInfo

ncRNA ID	novel_zma_miR4589
Species	Zea mays
Class	miRNA
Genome position	Chr4:3438520-3438612 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	70 - AGGUAAAGUGUGGCAAUUGAGGUA - 93
Stem-loop(if miRNA)	--   A   A                -------------        CG   G   CCU AAU UGCCACACUUUGCCUA             AGGUUAGU  UUC A   ||| ||| ||||||||||||||||             ||||||||  ||| A   GGA UUA ACGGUGUGAAAUGGAU             UCCAAUCA  AAG U AU   G   -                UAAAAAGACACAU        AU   U
Stem-loop sequence	CCUAAAUAUGCCACACUUUGCCUAAGGUUAGUCGUUCGAAUUGAAUAACUAACCUUACACAGAAAAAUUAGGUAAAGUGUGGCAAUUGAGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT064583.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |||||||=||||||||||||=||| targets:1647   UACCUCAGUUGCCACACUUUGCCU   1670 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150092.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |||||||=||||||||||||=||| targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276261 (LOC100276261), mRNA	NA	coding protein	psRNATarget
EU960971.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |||||||=||||||||||||=||| targets:1717   UACCUCAGUUGCCACACUUUGCCU   1740 Target Full Sequence	2.5	Zea mays clone 230073 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||||=||||||||||||=||| targets:855   UGCCUCAGUUGCCACACUUUGCCU   878 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||||=||||||||||||=||| targets:1339   UGCCUCAGUUGCCACACUUUGCCU   1362 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EZ066409.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||*|=|||||||||||||||| targets:7   UGCCUAAGUUGCCACACUUUACCU   30 Target Full Sequence	2.0	TSA: Zea mays contig02043, mRNA sequence	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   AU-GGAGUUAACGGUGUGAAAUGGA   1   ||-|||||*||||||||||||=||| targets:979   UAGCCUCACUUGCCACACUUUGCCU   1003 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
EU968686.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||*|*|||||||||||||||| targets:623   UGCCUAACUUGCCACACUUUACCU   646 Target Full Sequence	2.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||*|*|||||||||||||||| targets:606   UGCCUAACUUGCCACACUUUACCU   629 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   AUGGAGUUAACGGUGUGAAAUGGA   1   |=|||*|*|||||||||||||||| targets:641   UGCCUAACUUGCCACACUUUACCU   664 Target Full Sequence	2.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget