Search result

BaseInfo

ncRNA ID	novel_zma_miR4584
Species	Zea mays
Class	miRNA
Genome position	Chr1:158914369-158914494 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR1618883;SRR4237222;SRR4237225
Length	24
Mature sequence(if miRNA)	103 - AUCCGGUAUAAACGAACAAGGCCU - 126
Stem-loop(if miRNA)	--                   UU   --CAUC      C     -    AAUCAAAG     AUA   GCCUUGUUCGUUUGUAUCG  UUG      CGGAAU GUUCC AGCU        UUUAU   A   |||||||||||||||||||  |||      |||||| ||||| ||||        |||||   CGGAACAAGCAAAUAUGGC  AAC      GCCUUG UAAGG UUGG        AAGUG   A UC                   CU   CACCCA      C     A    -CCUAACG     AUU
Stem-loop sequence	GCCUUGUUCGUUUGUAUCGUUUUGCAUCCGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAAUUAGUGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCACCAAUCCGGUAUAAACGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095711.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   ||||||||||||||||||=||||| targets:40   AGGCCUUGUUCGUUUAUAUCGGAU   63 Target Full Sequence	1.5	TSA: Zea mays contig31364, mRNA sequence	NA	coding protein	psRNATarget
EU948349.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   |||||||||||||||||=|||||| targets:475   AGGCCUUGUUCGUUUAUGCCGGAU   498 Target Full Sequence	1.5	Zea mays clone 373385 mRNA sequence	NA	coding protein	psRNATarget
XM_020543230.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   |||||||||||||||*|||||||| targets:625   AGGCCUUGUUCGUUUCUACCGGAU   648 Target Full Sequence	1.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 39 (LOC103636418), mRNA	NA	coding protein	psRNATarget
XM_020542682.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   |||||||||||||||*|||||||| targets:714   AGGCCUUGUUCGUUUCUACCGGAU   737 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542681.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   |||||||||||||||*|||||||| targets:809   AGGCCUUGUUCGUUUCUACCGGAU   832 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406089.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   ||*||||||||||||*|||||||| targets:11   AGACCUUGUUCGUUUCUACCGGAU   34 Target Full Sequence	1.5	Sequence 4214 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238219.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   ||*||||||||||||*|||||||| targets:11   AGACCUUGUUCGUUUCUACCGGAU   34 Target Full Sequence	1.5	Sequence 4214 from Patent EP2985353	NA	coding protein	psRNATarget
JB166550.1	ncRNA:24   UCCGGAACAAGCAAAUAUGGCCUA   1   ||*||||||||||||*|||||||| targets:11   AGACCUUGUUCGUUUCUACCGGAU   34 Target Full Sequence	1.5	Sequence 4214 from Patent EP2559767	NA	coding protein	psRNATarget