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BaseInfo

ncRNA ID	novel_zma_miR4582
Species	Zea mays
Class	miRNA
Genome position	Chr10:69724903-69725015 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	90 - GCCCUAGGGUCGGACGGAGCGGAG - 113
Stem-loop(if miRNA)	--G  G  G     U        --UUA    AUG     GCUCCUCCGAGGUCGACGU    UG UC GUCCG GCCCUGGG     GGCU   UGGAG                   C    || || ||||| ||||||||     ||||   |||||                   A    GC AG CAGGC UGGGAUCC     CUGA   GUCAG                   A GAG  G  G     -        CGUAC    ---     AGUCAGGGCCUUCUGUCUG
Stem-loop sequence	GUGGUCGGUCCGUGCCCUGGGUUAGGCUAUGUGGAGGCUCCUCCGAGGUCGACGUCAAGUCUGUCUUCCGGGACUGAGACUGAGUCCAUGCCCUAGGGUCGGACGGAGCGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU951983.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:473   CUCCGCUCCGCCCGACCCCAGGGC   496 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:644   CUCCGCUCCGCCCGACCCCAGGGC   667 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:701   CUCCGCUCCGCCCGACCCCAGGGC   724 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
EU951983.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:758   CUCCGCUCCGCCCGACCCCAGGGC   781 Target Full Sequence	2.5	Zea mays clone 1064297 mRNA sequence	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:779   CUCCGCUCCGCCCGACCCCAGGGC   802 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:950   CUCCGCUCCGCCCGACCCCAGGGC   973 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:1007   CUCCGCUCCGCCCGACCCCAGGGC   1030 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
BT038063.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||||||*|||||||*||||| targets:1064   CUCCGCUCCGCCCGACCCCAGGGC   1087 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0209O09 mRNA, complete cds	NA	coding protein	psRNATarget
EU941303.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||*=||*||||||||||||| targets:49   CUCCGCCUCGCCCGACCCUAGGGC   72 Target Full Sequence	3.0	Zea mays clone 1444511 mRNA sequence	NA	coding protein	psRNATarget
EU940899.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||*=||*||||||||||||| targets:1165   CUCCGCCUCGCCCGACCCUAGGGC   1188 Target Full Sequence	3.0	Zea mays clone 1168123 mRNA sequence	NA	coding protein	psRNATarget
XM_020541624.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||*=||*||||||||||||| targets:1159   CUCCGCCUCGCCCGACCCUAGGGC   1182 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103644648 (LOC103644648), mRNA	NA	coding protein	psRNATarget
XM_020541001.1	ncRNA:24   GAGGCGAGGCAGGCUGGGAUCCCG   1   ||||||*=||*||||||||||||| targets:5200   CUCCGCCUCGCCCGACCCUAGGGC   5223 Target Full Sequence	3.0	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget