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BaseInfo

ncRNA ID	novel_zma_miR4581
Species	Zea mays
Class	miRNA
Genome position	Chr10:63876853-63876914 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - GGGAUUGGAGGGGAUUAAGGUGGA - 24
Stem-loop(if miRNA)	--                AA  U      GA   GGGAUUGGAGGGGAUU  GG GGAAAU  A   ||||||||||||||||  || ||||||   CUCUAACUUCCCUUAA  UC CCUUUA  C AG                CC  U      AU
Stem-loop sequence	GGGAUUGGAGGGGAUUAAGGUGGAAAUGAACUAAUUUCCUCUCCAAUUCCCUUCAAUCUCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547122.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||||||||||||||||||||=|| targets:291   UCCACCUUAAUCCCCUCCAAUUCC   314 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||||||||||||||||||||=|| targets:399   UCCACCUUAAUCCCCUCCAAUUCC   422 Target Full Sequence	1.5	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU976682.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=||=|||||||||=||||||||| targets:707   UUCAUCUUAAUCCCUUCCAAUCCC   730 Target Full Sequence	1.5	Zea mays clone 987107 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU968273.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=||=|||||||||=||||||||| targets:774   UUCAUCUUAAUCCCUUCCAAUCCC   797 Target Full Sequence	1.5	Zea mays clone 318071 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546797.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||||||||*||||||||||||| targets:5206   UCCACCUUAACCCCCUCCAAUCCC   5229 Target Full Sequence	1.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666766.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||||||||*||||||||||||| targets:5340   UCCACCUUAACCCCCUCCAAUCCC   5363 Target Full Sequence	1.0	PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||||||*|||||=|||||||||| targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	2.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|||||*|||||||||||||||= targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	2.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|||||*|||||||||||||||= targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	2.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	2.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*||||||||||||=||||||= targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|-|||||||||||||||||||= targets:78   UUC-CCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	1.0	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|||||||||||||||||* targets:1154   UCCGUAUUAAUCCCCUCCAAUCCA   1177 Target Full Sequence	2.0	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|||||||||||||||||* targets:1192   UCCGUAUUAAUCCCCUCCAAUCCA   1215 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*|||*|||||||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*|||*|||||||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*|||*|||||||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*|||*|||||||||=|||||| targets:1798   UCCCCCUCAAUCCCCUCUAAUCCC   1821 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||*|||*||||||||||=||||| targets:3175   UCCCCCUCAAUCCCCUCCGAUCCC   3198 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|*|||*|||||||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|*|||*|||||||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |=|*|||*|||||||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   AGGU---GGAAUUAGGGGAGGUUAGGG   1   ||=|---|||*|||||||||=|||||| targets:1064   UCUAGCCCCUCAAUCCCCUCUAAUCCC   1090 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:439   UCCAUAUCAAUCCCCUCCAAUCCA   462 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:892   UCCAUAUCAAUCCCCUCCAAUCCA   915 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:840   UCCAUAUCAAUCCCCUCCAAUCCA   863 Target Full Sequence	3.0	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:838   UCCAUAUCAAUCCCCUCCAAUCCA   861 Target Full Sequence	3.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:839   UCCAUAUCAAUCCCCUCCAAUCCA   862 Target Full Sequence	3.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||||=*|*|||||||||||||||* targets:911   UCCAUAUCAAUCCCCUCCAAUCCA   934 Target Full Sequence	3.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   *||*|||*|||||||||||=|||| targets:10   GCCCCCUCAAUCCCCUCCAGUCCC   33 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=||||||=||||||||||| targets:81   AGAGAUUUAAUCUCCUCCAAUCCC   104 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ||=*=||*|||||||||||||||= targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   ***=*=|||||||||||||||||| targets:3263   GGGGAUUUAAUCCCCUCCAAUCCC   3286 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:693   UCCGUAUCAAUCCCCUCCAAUCCA   716 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   *|||=*|*|||||||||||||||* targets:838   YCCAUAUCAAUCCCCUCCAAUCCA   861 Target Full Sequence	3.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_020545207.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:16   UCCGUAUCAAUCCCCUCCAAUCCA   39 Target Full Sequence	3.0	PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:1974   UCCGUAUCAAUCCCCUCCAAUCCA   1997 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:1974   UCCGUAUCAAUCCCCUCCAAUCCA   1997 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:1624   UCCGUAUCAAUCCCCUCCAAUCCA   1647 Target Full Sequence	3.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
XM_008658561.2	ncRNA:24   AGGUGGAAUUAGGGGAGGUUAGGG   1   |||==*|*|||||||||||||||* targets:295   UCCGUAUCAAUCCCCUCCAAUCCA   318 Target Full Sequence	3.0	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget