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BaseInfo

ncRNA ID	novel_zma_miR4579
Species	Zea mays
Class	miRNA
Genome position	Chr1:105782534-105782654 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5100255;SRR2089703
Length	21
Mature sequence(if miRNA)	101 - UCCAGACGUAACCGAACAAGC - 121
Stem-loop(if miRNA)	--      A          A   A    A   U  -    AA         CU    UU  A   UUGUUC GUUGCGUCUG AUC AAAG GAU GA GGGA  UUAAAUCCC  UCUA  CA U   |||||| |||||||||| ||| |||| ||| || ||||  |||||||||  ||||  ||   AACAAG CAAUGCAGAC UAG UUUC CUA CU CCCU  AAUUUAGGG  GGAU  GU U CG      C          C   C    C   C  G    --         AG    CU  U
Stem-loop sequence	UUGUUCAGUUGCGUCUGAAUCAAAAGAGAUUGAGGGAAAUUAAAUCCCCUUCUAUUCAAUUUUGUCUAGGGAGGGAUUUAAUCCCGUCCAUCCCUUUCGAUCCAGACGUAACCGAACAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069231.2	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   ||||||||||||||||||||| targets:974   GCUUGUUCGGUUACGUCUGGA   994 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0366D18 mRNA, complete cds	NA	coding protein	psRNATarget
EU944906.1	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   |||||||||||||=||||||| targets:265   GCUUGUUCGGUUAUGUCUGGA   285 Target Full Sequence	1.5	Zea mays clone 235068 mRNA sequence	NA	coding protein	psRNATarget
HI402991.1	ncRNA:20   GAACAAGCCAAUGCAGACCU   1   |||||||||||=|||||||| targets:1   CUUGUUCGGUUGCGUCUGGA   20 Target Full Sequence	1.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:20   GAACAAGCCAAUGCAGACCU   1   |||||||||||=|||||||| targets:1   CUUGUUCGGUUGCGUCUGGA   20 Target Full Sequence	1.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
JB163452.1	ncRNA:20   GAACAAGCCAAUGCAGACCU   1   |||||||||||=|||||||| targets:1   CUUGUUCGGUUGCGUCUGGA   20 Target Full Sequence	1.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
BT068750.1	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   *|||||||||||||||=|||| targets:52   CCUUGUUCGGUUACGUUUGGA   72 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0377I06 mRNA, complete cds	NA	coding protein	psRNATarget
EZ056710.1	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   ||||*|||||||=|||||||| targets:141   GCUUAUUCGGUUGCGUCUGGA   161 Target Full Sequence	2.5	TSA: Zea mays contig57832, mRNA sequence	NA	coding protein	psRNATarget
S78780.1	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   *||||||||*||||||||||| targets:352   ACUUGUUCGCUUACGUCUGGA   372 Target Full Sequence	1.5	(gamma-zeinA)=opaque2 modifier {5' region} [Zea mays=maize, Tuxpeno CMS 450, mRNA Partial, 1889 nt]	NA	coding protein	psRNATarget
AY109329.1	ncRNA:21   CGAACAAGCCAAUGCAGACCU   1   *||||||||*||||||||||| targets:352   NCUUGUUCGCUUACGUCUGGA   372 Target Full Sequence	1.5	Zea mays CL1979_1 mRNA sequence	NA	coding protein	psRNATarget