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BaseInfo

ncRNA ID novel_zma_miR4577
Species Zea mays
Class miRNA
Genome position Chr4:206583351-206583526 [+]
Reference genome RefGen_v4
Source SRR2287162
Length 24
Mature sequence(if miRNA) 1 - CCUGGUGCGGCUGAACCGGAUGGC - 24
Stem-loop(if miRNA) --      G     GA       G     A  G    A  A                     A   A    CA      C       A
  CCUGGU CGGCU  ACCGGAU GCACC UU GGCU GG CUUUCUCUAGUUAUUGGAAGC UAG GCUC  AAUAUA AAACUAU U
  |||||| |||||  ||||||| ||||| || |||| || ||||||||||||||||||||| ||| ||||  |||||| |||||||
  GGAUCA GCCGA  UGGCCUA CGUGG AA CUGG CC GAAGGAGAUCAAUAACCUUCG GUC CGAG  UUAUAU UUUGAUA A
CU      G     GC       A     C  G    A  C                     G   C    AA      A       U
Stem-loop sequence CCUGGUGCGGCUGAACCGGAUGGCACCAUUGGGCUAGGACUUUCUCUAGUUAUUGGAAGCAUAGAGCUCCAAAUAUACAAACUAUAUAUAUAGUUUAUAUAUUAAGAGCCCUGGGCUUCCAAUAACUAGAGGAAGCCCAGGUCGAACGGUGCAAUCCGGUCGAGCCGGACUAGGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020544200.1
ncRNA:24   CGGUAGGCCAAGUCGGCGUGGUCC   1
  |||||||||||=||||||||||||
targets:574   GCCAUCCGGUUUAGCCGCACCAGG   597

1.5 PREDICTED: Zea mays uncharacterized LOC109942302 (LOC109942302), mRNA NA coding protein psRNATarget