Search result

BaseInfo

ncRNA ID	novel_zma_miR4575
Species	Zea mays
Class	miRNA
Genome position	Chr3:178123620-178123699 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	22
Mature sequence(if miRNA)	1 - GAGGGGAUUGGAGAGGCUAAAA - 22
Stem-loop(if miRNA)	--                        C  CC       AA   GAGGGGAUUGGAGAGGCUAAAAUC UC  CUUAUUC  U   |||||||||||||||||||||||| ||  |||||||   UUCUCUUAACCUCUCCGAUUUUAG AG  GAAUAAG  U GC                        A  AA       CU
Stem-loop sequence	GAGGGGAUUGGAGAGGCUAAAAUCCUCCCCUUAUUCAAUUUCGAAUAAGAAGAAGAUUUUAGCCUCUCCAAUUCUCUUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY104284.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   *||||||||||||=|||||||| targets:1001   AUUUAGCCUCUCCGAUCCCCUC   1022 Target Full Sequence	1.5	Zea mays PCO103339 mRNA sequence	NA	coding protein	psRNATarget
BT017648.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||*|||||||||||||||||| targets:164   UUUAAGCCUCUCCAAUCCCCUC   185 Target Full Sequence	1.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*||||||||||||| targets:3497   UUUUAGCCCCUCCAAUCCCCUC   3518 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*||||||||||||| targets:3532   UUUUAGCCCCUCCAAUCCCCUC   3553 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163850.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||||||=||||| targets:71   UUUUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
HI403389.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||||||=||||| targets:71   UUUUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||||||=||||| targets:71   UUUUAGCCCCUCCAAUUCCCUC   92 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||=||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||=||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*|||=||||||||| targets:199   UUUUAGCCCCUCUAAUCCCCUC   220 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||||*||=|||||||||| targets:1110   UUUUAGCCCCUUCAAUCCCCUC   1131 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||||*||*||||||||||||| targets:681   UUUUAUCCCCUCCAAUCCCCUC   702 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||||*||*||||||||||||| targets:1561   UUUUAUCCCCUCCAAUCCCCUC   1582 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||||*||*||||||||||||| targets:1581   UUUUAUCCCCUCCAAUCCCCUC   1602 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||||*||*||||||||||||| targets:1605   UUUUAUCCCCUCCAAUCCCCUC   1626 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   |||||*||*||||||||||||| targets:1638   UUUUAUCCCCUCCAAUCCCCUC   1659 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU943186.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||||||*||||||||||||*|| targets:1141   UUUUAGGCUCUCCAAUCCCAUC   1162 Target Full Sequence	2.5	Zea mays clone 1582065 mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   **||||||*||||||||||||| targets:329   GCUUAGCCCCUCCAAUCCCCUC   350 Target Full Sequence	1.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   *||||*||*||||||||||||| targets:1028   CUUUAACCCCUCCAAUCCCCUC   1049 Target Full Sequence	2.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:22   AAAAUCGGAGAGGUUAGGGGAG   1   ||*|||||*|||||||||*||| targets:215   UUCUAGCCCCUCCAAUCCACUC   236 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget