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BaseInfo

ncRNA ID	novel_zma_miR4574
Species	Zea mays
Class	miRNA
Genome position	Chr3:159925167-159925289 [+]
Reference genome	RefGen_v4
Source	SRR2287162;SRR2089702;SRR2089703
Length	21
Mature sequence(if miRNA)	1 - UUGGGAGCAAGUGGAAUGGAU - 21
Stem-loop(if miRNA)	--          GU             ---------                      C      A   UUGGGAGCAA  GGAAUGGAUGGGU         UUGAGGGGGCUAGAAUCCCUCA UAUUCA U   ||||||||||  |||||||||||||         |||||||||||||||||||||| ||||||   AACCUUCGUU  CCUUACCUACCCA         AACUCCCCCGGUCUUAGGGAGU AUAAGU U CA          AC             UUGUACCCA                      A      U
Stem-loop sequence	UUGGGAGCAAGUGGAAUGGAUGGGUUUGAGGGGGCUAGAAUCCCUCACUAUUCAAUUUUGAAUAAUGAGGGAUUCUGGCCCCCUCAAACCCAUGUUACCCAUCCAUUCCCAUUGCUUCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166488.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:102   CUUCAUUUCACUUGCUCCCAA   122 Target Full Sequence	2.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:102   CUUCAUUUCACUUGCUCCCAA   122 Target Full Sequence	2.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
HI406027.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:102   CUUCAUUUCACUUGCUCCCAA   122 Target Full Sequence	2.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:2638   CUUCAUUUCACUUGCUCCCAA   2658 Target Full Sequence	2.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:2638   CUUCAUUUCACUUGCUCCCAA   2658 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
BT061256.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *||=||||||||||||=|||| targets:1897   CUCUAUUCCACUUGCUUCCAA   1917 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0127C16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *|=||||=||||||||||||| targets:2726   CUUCAUUUCACUUGCUCCCAA   2746 Target Full Sequence	2.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963261.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *||||*|=||||||||||||| targets:1036   CUCCAAUUCACUUGCUCCCAA   1056 Target Full Sequence	2.0	Zea mays clone 260003 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150318.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *||||*|=||||||||||||| targets:1036   CUCCAAUUCACUUGCUCCCAA   1056 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001320255.1	ncRNA:21   UAGGUAAGGUGAACGAGGGUU   1   *||||*|=||||||||||||| targets:1245   CUCCAAUUCACUUGCUCCCAA   1265 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA	NA	coding protein	psRNATarget