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BaseInfo

ncRNA ID	novel_zma_miR4572
Species	Zea mays
Class	miRNA
Genome position	Chr3:136911922-136912007 [+]
Reference genome	RefGen_v4
Source	SRR2287162;SRR5451004
Length	24
Mature sequence(if miRNA)	1 - CCAGAAGGGGAUUGGAGGGGAUUU - 24
Stem-loop(if miRNA)	--                                G       A   CCAGAAGGGGAUUGGAGGGGAUUUAAUCCCCU CUAGUCA A   |||||||||||||||||||||||||||||||| |||||||   GGUCUUCCCCUAAUCUCCCCUAAGUUAGGGGA GAUCAGU A UA                                G       A
Stem-loop sequence	CCAGAAGGGGAUUGGAGGGGAUUUAAUCCCCUGCUAGUCAAAAAUGACUAGGAGGGGAUUGAAUCCCCUCUAAUCCCCUUCUGGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049235.1	ncRNA:21   AGGGGAGGUUAGGGGAAGACC   1   ||||||=|||||||||||||| targets:1   UCCCCUUCAAUCCCCUUCUGG   21 Target Full Sequence	1.0	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   UUUA----GGGGAGGUUAGGGGAAGACC   1   ||||----||||||||||*||||||||| targets:90   AAAUUAAACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	1.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   UUUA----GGGGAGGUUAGGGGAAGACC   1   ||||----||||||||||*||||||||| targets:90   AAAUUAAACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	1.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   UUUA----GGGGAGGUUAGGGGAAGACC   1   ||||----||||||||||*||||||||| targets:90   AAAUUAAACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	1.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020548160.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||=|||=||||||||||||| targets:4796   AAA-CCUCUCUAAUCCCCUUCUGG   4818 Target Full Sequence	2.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670752.2	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||=|||=||||||||||||| targets:5023   AAA-CCUCUCUAAUCCCCUUCUGG   5045 Target Full Sequence	2.0	PREDICTED: Zea mays putative ABC transporter C family member 15 (LOC103646012), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403028.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||||||||||||||*||||| targets:82   AAA-CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
JB163489.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||||||||||||||*||||| targets:82   AAA-CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||||||||||||||*||||| targets:82   AAA-CCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||-||||||||||||||*||||| targets:1602   AAA-CCCCUCCAAUCCCCCUCUGG   1624 Target Full Sequence	1.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646876.2	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||--||||=|||||||||*|||| targets:1567   AAA--CCCUUCAAUCCCCUACUGG   1588 Target Full Sequence	2.5	PREDICTED: Zea mays Oxysterol-binding protein-related protein 1D (pco074409), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008646873.2	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||--||||=|||||||||*|||| targets:1567   AAA--CCCUUCAAUCCCCUACUGG   1588 Target Full Sequence	2.5	PREDICTED: Zea mays Oxysterol-binding protein-related protein 1D (pco074409), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT067318.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||--||||=|||||||||*|||| targets:1515   AAA--CCCUUCAAUCCCCUACUGG   1536 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005L19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176125.1	ncRNA:24   UUUAGGGGAGGUUAGGGGAAGACC   1   |||--||||=|||||||||*|||| targets:1515   AAA--CCCUUCAAUCCCCUACUGG   1536 Target Full Sequence	2.5	Zea mays Oxysterol-binding protein-related protein 1D (pco074409), mRNA	NA	coding protein	psRNATarget