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BaseInfo

ncRNA ID	novel_zma_miR4571
Species	Zea mays
Class	miRNA
Genome position	Chr3:100574581-100574676 [+]
Reference genome	RefGen_v4
Source	SRR2287162
Length	24
Mature sequence(if miRNA)	1 - AGGAAGAAGAAGAACAGUAGAGGA - 24
Stem-loop(if miRNA)	--  G      A   A     -   GAGGA    CCG    AAG    UC   AG AAGAAG AGA CAGUA GAG     GGUU   GAGA   GAGU  U   || |||||| ||| ||||| |||     ||||   ||||   ||||   UC UUCUUC UCU GUCGU CUU     CUAA   CUCU   CUCG  U CC  G      A   C     A   AGUUG    UAA    ---    UG
Stem-loop sequence	AGGAAGAAGAAGAACAGUAGAGGAGGAGGUUCCGGAGAAAGGAGUUCUUGUGCUCUCUCAAUAAUCGUUGAUUCAUGCUGCUCUACUUCUUGCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957668.1	ncRNA:24   AGGAGAUGACAAGAAGAAGAAGGA   1   ||=|||*||*|||||||||||||| targets:1954   UCUUCUUCUCUUCUUCUUCUUCCU   1977 Target Full Sequence	2.0	Zea mays clone 1602541 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666526.2	ncRNA:24   AGGAGAUGACAAGAAGAAGAAGGA   1   ||||||*=|*|||||||||||||| targets:2028   UCCUCUUUUUUUCUUCUUCUUCCU   2051 Target Full Sequence	3.0	PREDICTED: Zea mays AAA-ATPase At2g46620 (LOC103643363), mRNA	NA	coding protein	psRNATarget
EU968009.1	ncRNA:24   AGGAGAUGA-CAAGAAGAAGAAGGA   1   ||||*||||-|*||||||||||||| targets:222   UCCUGUACUUGGUCUUCUUCUUCCU   246 Target Full Sequence	3.0	Zea mays clone 312812 pectate lyase precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157251.1	ncRNA:24   AGGAGAUGA-CAAGAAGAAGAAGGA   1   ||||*||||-|*||||||||||||| targets:222   UCCUGUACUUGGUCUUCUUCUUCCU   246 Target Full Sequence	3.0	Zea mays pectate lyase (LOC100284356), mRNA	NA	coding protein	psRNATarget
BT041748.1	ncRNA:24   AGGAGAUGACAAGAAGAAGAAGGA   1   |==|=|*=|||||||||||||||* targets:971   UUUUUUUUUGUUCUUCUUCUUCCG   994 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0044A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148160.1	ncRNA:24   AGGAGAUGACAAGAAGAAGAAGGA   1   |==|=|*=|||||||||||||||* targets:971   UUUUUUUUUGUUCUUCUUCUUCCG   994 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273752 (LOC100273752), mRNA	NA	coding protein	psRNATarget
XM_020545735.1	ncRNA:24   AG-GAGAUGACAAGAAGAAGAAGGA   1   ||-||||*=|*|||||||||||||| targets:786   UCUCUCUCUUCUUCUUCUUCUUCCU   810 Target Full Sequence	3.0	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039-like (LOC109943013), mRNA	NA	coding protein	psRNATarget
XM_008664317.2	ncRNA:24   AGGA-GAUGACAAGAAGAAGAAGGA   1   |*||-||=|*||||||||||||||| targets:410   UGCUGCUGCCGUUCUUCUUCUUCCU   434 Target Full Sequence	2.0	PREDICTED: Zea mays LRR receptor-like serine/threonine-protein kinase GSO2 (LOC103640855), mRNA	NA	coding protein	psRNATarget