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BaseInfo

ncRNA ID	novel_zma_miR4568
Species	Zea mays
Class	miRNA
Genome position	Chr3:5760860-5760905 [-]
Reference genome	RefGen_v4
Source	SRR2287162
Length	20
Mature sequence(if miRNA)	27 - GCGGGCGUAGAGAGAGCCGG - 46
Stem-loop(if miRNA)	--       U   --G       G   GCGGGCG AGA   AGAGCCG C   ||||||| |||   |||||||   CGUCUGU UCU   UCUCGGC A CU       C   AGG       U
Stem-loop sequence	GCGGGCGUAGAGAGAGCCGGCAUCGGCUCUGGAUCUCUGUCUGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107941.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:321   CCGGCUCUCUCCACGCCCGU   340 Target Full Sequence	2.5	Zea mays PCO105074 mRNA sequence	NA	coding protein	psRNATarget
JN638834.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP3 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
JN638832.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP1 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
KF294025.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:122   CCGGCUCUCUCCACGCCCGU   141 Target Full Sequence	2.5	Zea mays cultivar Hp301 transposon helitron Hel1-332aSVP1 (Hel1-332a) pseudogene mRNA, partial sequence	NA	coding protein	psRNATarget
JN638833.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP2 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
KF294026.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:122   CCGGCUCUCUCCACGCCCGU   141 Target Full Sequence	2.5	Zea mays cultivar Hp301 transposon helitron Hel1-332aSVP2 (Hel1-332a) pseudogene mRNA, partial sequence	NA	coding protein	psRNATarget
NM_001350701.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:308   CCGGCUCUCUCCACGCCCGU   327 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192045 (cl2576_1e), mRNA	NA	coding protein	psRNATarget
BT034172.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:308   CCGGCUCUCUCCACGCCCGU   327 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032P10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650559.2	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:322   CCGGCUCUCUCCACGCCCGU   341 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103629438), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JN638836.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP5 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
BT067559.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:196   CCGGCUCUCUCCACGCCCGU   215 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0088K16 mRNA, complete cds	NA	coding protein	psRNATarget
BT034328.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:235   CCGGCUCUCUCCACGCCCGU   254 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0129P10 mRNA, complete cds	NA	coding protein	psRNATarget
JN638837.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP6 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
JN638835.1	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:88   CCGGCUCUCUCCACGCCCGU   107 Target Full Sequence	2.5	Zea mays transposon helitron Hel1-332aSVP4 (Hel1) pseudogene mRNA, complete sequence	NA	coding protein	psRNATarget
XM_008650560.2	ncRNA:20   GGCCGAGAGAGAUGCGGGCG   1   |||||||||||*|||||||= targets:321   CCGGCUCUCUCCACGCCCGU   340 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103629438), transcript variant X2, mRNA	NA	coding protein	psRNATarget