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BaseInfo

ncRNA ID	novel_zma_miR4565
Species	Zea mays
Class	miRNA
Genome position	Chr4:233001197-233001249 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - AGGAACCGAACCCGAAUAGACCGA - 24
Stem-loop(if miRNA)	-A                       C   GGAACCGAACCCGAAUAGACCGA A   |||||||||||||||||||||||   UUUUGGCUUGGGCUUAUCUGGCU A AA                       U
Stem-loop sequence	AGGAACCGAACCCGAAUAGACCGACAAUUCGGUCUAUUCGGGUUCGGUUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008650156.2	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   *=|||||||||||||||||||||| targets:592   AUGGUCUAUUCGGGUUCGGUUCCU   615 Target Full Sequence	0.0	PREDICTED: Zea mays GDSL esterase/lipase At1g71691-like (LOC103628962), mRNA	NA	coding protein	psRNATarget
XM_020541164.1	ncRNA:24   AGC---CAGAUAAGCCCAAGCCAAGGA   1   |=|---||||||||||||||||||||| targets:91   UUGUGAGUCUAUUCGGGUUCGGUUCCU   117 Target Full Sequence	0.0	PREDICTED: Zea mays UDP-glycosyltransferase 91A1-like (LOC109940837), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674187.2	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   *|***||=||||*||||||||||| targets:252   CCCUGCUGUUCGUGUUCGGUUCCU   275 Target Full Sequence	2.5	PREDICTED: Zea mays IQ-domain 3 (pco155237), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JX428489.1	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   ***|**|=|||||||||||||||* targets:1035   GAAGAAUGUUCGGGUUCGGUUCCA   1058 Target Full Sequence	3.0	Zea mays subsp. mays clone pUT3086 NAC134 NAC type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT087589.1	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   ***|**|=|||||||||||||||* targets:1105   GAAGAAUGUUCGGGUUCGGUUCCA   1128 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0124L16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154212.2	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   ***|**|=|||||||||||||||* targets:1130   GAAGAAUGUUCGGGUUCGGUUCCA   1153 Target Full Sequence	3.0	Zea mays no apical meristem protein (LOC100281294), mRNA	NA	coding protein	psRNATarget
EU956262.1	ncRNA:24   AGCCAGAUAAGCCCAAGCCAAGGA   1   ***|**|=|||||||||||||||* targets:1131   GAAGAAUGUUCGGGUUCGGUUCCA   1154 Target Full Sequence	3.0	Zea mays clone 1559822 no apical meristem protein mRNA, complete cds	NA	coding protein	psRNATarget