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BaseInfo

ncRNA ID	novel_zma_miR4563
Species	Zea mays
Class	miRNA
Genome position	Chr4:17312264-17312332 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2089704
Length	24
Mature sequence(if miRNA)	46 - GGCGGCUGUGCUCGGCGGCGGGGA - 69
Stem-loop(if miRNA)	-    -  A   -    C         ------    G  CCCC UC CCG GCAC GCCGUCGCA      CUGC G  |||| || ||| |||| |||||||||      ||||  GGGG GG GGC CGUG CGGCGGCGU      GGCG G A    C  C   U    U         CAGAGC    C
Stem-loop sequence	CCCCUCACCGGCACCGCCGUCGCACUGCGGGCGCGGCGAGACUGCGGCGGCUGUGCUCGGCGGCGGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682821.2	ncRNA:24   AGGGGCGGCG---GCUCGUGUCGGCGG   1   ||||*|||||---|||||||||||||| targets:66   UCCCGGCCGCAGCCGAGCACAGCCGCC   92 Target Full Sequence	3.0	PREDICTED: Zea mays Aspartokinase (pco067113e), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008682822.2	ncRNA:24   AGGGGCGGCG---GCUCGUGUCGGCGG   1   ||||*|||||---|||||||||||||| targets:66   UCCCGGCCGCAGCCGAGCACAGCCGCC   92 Target Full Sequence	3.0	PREDICTED: Zea mays Aspartokinase (pco067113e), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008682820.2	ncRNA:24   AGGGGCGGCG---GCUCGUGUCGGCGG   1   ||||*|||||---|||||||||||||| targets:66   UCCCGGCCGCAGCCGAGCACAGCCGCC   92 Target Full Sequence	3.0	PREDICTED: Zea mays Aspartokinase (pco067113e), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682819.2	ncRNA:24   AGGGGCGGCG---GCUCGUGUCGGCGG   1   ||||*|||||---|||||||||||||| targets:66   UCCCGGCCGCAGCCGAGCACAGCCGCC   92 Target Full Sequence	3.0	PREDICTED: Zea mays Aspartokinase (pco067113e), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT064963.1	ncRNA:24   AGGGGCGGCG---GCUCGUGUCGGCGG   1   ||||*|||||---|||||||||||||| targets:40   UCCCGGCCGCAGCCGAGCACAGCCGCC   66 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0068P17 mRNA, complete cds	NA	coding protein	psRNATarget
BT016318.1	ncRNA:24   AGGGGCGGCGGCUCGUGUCGGCGG   1   *||*|||=|||||||||=|||||| targets:730   GCCGCGCUGCCGAGCACGGCCGCC   753 Target Full Sequence	2.5	Zea mays clone Contig151 mRNA sequence	NA	coding protein	psRNATarget
NM_001174859.1	ncRNA:24   AGGG-------GCGGCGGCUCGUGUCGGCGG   1   ||||-------|||||||||||||=|||||* targets:653   UCCCGCAUGGCCGCCGCCGAGCACGGCCGCG   683 Target Full Sequence	2.5	Zea mays exocyst subunit exo70 family protein D1 (LOC100382098), mRNA	NA	coding protein	psRNATarget
BT063145.1	ncRNA:24   AGGG-------GCGGCGGCUCGUGUCGGCGG   1   ||||-------|||||||||||||=|||||* targets:653   UCCCGCAUGGCCGCCGCCGAGCACGGCCGCG   683 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0031C02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137505.1	ncRNA:23   GG--GGCGGCGGCUCGUGUCGGCGG   1   ||--||||*|||||||||||||||| targets:1   CCGGCCGCAGCCGAGCACAGCCGCC   25 Target Full Sequence	1.0	Zea mays Aspartokinase (pco067113e), mRNA	NA	coding protein	psRNATarget
BT034385.1	ncRNA:23   GG--GGCGGCGGCUCGUGUCGGCGG   1   ||--||||*|||||||||||||||| targets:1   CCGGCCGCAGCCGAGCACAGCCGCC   25 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0165L02 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549204.1	ncRNA:24   AG---GGGCGGCGGCUCGUGUCGGCGG   1   ||---|||||*||=||||||||||||* targets:98   UCGCGCCCGCAGCUGAGCACAGCCGCA   124 Target Full Sequence	3.0	PREDICTED: Zea mays predicted GPI-anchored protein 58 (LOC109944440), mRNA	NA	coding protein	psRNATarget