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BaseInfo

ncRNA ID	novel_zma_miR4562
Species	Zea mays
Class	miRNA
Genome position	Chr4:180364014-180364105 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287162;SRR5451006
Length	24
Mature sequence(if miRNA)	1 - CCAUAUGGAUUAAGUGGGAUUGGA - 24
Stem-loop(if miRNA)	--C          AA           U   U    AUCCCAAACAA    CAUAUGGAUU  GUGGGAUUGGA AGA UUGA           G    ||||||||||  ||||||||||| ||| ||||    GUGUAUCUAA  UACCCUAACCU UUU AACU           U UAU          CG           U   U    CUUUUCCAAAC
Stem-loop sequence	CCAUAUGGAUUAAGUGGGAUUGGAUAGAUUUGAAUCCCAAACAAGUCAAACCUUUUCUCAAUUUUUUCCAAUCCCAUGCAAUCUAUGUGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020542399.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:7262   UCCAAUCCCACUUAAUCCACAUGG   7285 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657578.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:7251   UCCAAUCCCACUUAAUCCACAUGG   7274 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657579.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:7147   UCCAAUCCCACUUAAUCCACAUGG   7170 Target Full Sequence	1.5	PREDICTED: Zea mays acyl-coenzyme A thioesterase 13 (LOC103635012), transcript variant X4, mRNA	NA	coding protein	psRNATarget
JB163480.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1144 from Patent EP2559767	NA	coding protein	psRNATarget
HI403019.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1144 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235149.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |||||||||||||||||||*|||| targets:100   UCCAAUCCCACUUAAUCCACAUGG   123 Target Full Sequence	1.5	Sequence 1144 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008669549.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   ||=|||||||||*||||||||||| targets:2084   UCUAAUCCCACUCAAUCCAUAUGG   2107 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100279312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042044.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   ||=|||||||||*||||||||||| targets:1367   UCUAAUCCCACUCAAUCCAUAUGG   1390 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0117M08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665263.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||=|||||||||=|||||| targets:259   CUCAAUCUCACUUAAUCUAUAUGG   282 Target Full Sequence	2.5	PREDICTED: Zea mays calcium-binding protein PBP1 (LOC103641962), mRNA	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   |=|||||||*||*||||||||||| targets:848   UUCAAUCCCCCUCAAUCCAUAUGG   871 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:1968   CUCAAUCCCCCUCAAUCCAUAUGG   1991 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:605   CUCAAUCCCCCUCAAUCCAUAUGG   628 Target Full Sequence	2.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:1072   CUCAAUCCCUCUCAAUCCAUAUGG   1095 Target Full Sequence	2.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	2.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	2.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241947.1	ncRNA:24   AGGUUAGGGUGAAUUAGGUAUACC   1   *=|||||||*||*||||||||||| targets:79   CUCAAUCCCCCUCAAUCCAUAUGG   102 Target Full Sequence	2.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget