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BaseInfo

ncRNA ID	novel_zma_miR4561
Species	Zea mays
Class	miRNA
Genome position	Chr1:62093053-62093122 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR5105959;SRR5105963
Length	24
Mature sequence(if miRNA)	1 - ACUGACUCUGCGCACGCGUGGACC - 24
Stem-loop(if miRNA)	--    -  -      CAC  G     C       CC   ACUG AC UCUGCG   GC UGGAC GUCUGCG  A   |||| || ||||||   || ||||| |||||||  C   UGGC UG AGACGC   CG GCCUG CAGGCGC  C UC    C  C      ---  G     U       CA
Stem-loop sequence	ACUGACUCUGCGCACGCGUGGACCGUCUGCGCCACCACCGCGGACUGUCCGGGCCGCAGACGUCCGGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001196968.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   |||||=|||||||||||||||||| targets:788   GGUCCGCGCGUGCGCAGAGUCAGU   811 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   |||||=|||||||||||||||||| targets:788   GGUCCGCGCGUGCGCAGAGUCAGU   811 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176396.2	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   ||||==|||||||||||||||||| targets:1089   GGUCUGCGCGUGCGCAGAGUCAGU   1112 Target Full Sequence	1.0	Zea mays Amidohydrolase family (LOC100383761), mRNA	NA	coding protein	psRNATarget
BT068223.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   ||||==|||||||||||||||||| targets:1089   GGUCUGCGCGUGCGCAGAGUCAGU   1112 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0087M02 mRNA, complete cds	NA	coding protein	psRNATarget
EU964936.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   |||||=||||*||||||||||||| targets:1207   GGUCCGCGCGCGCGCAGAGUCAGU   1230 Target Full Sequence	2.0	Zea mays clone 282666 ethylene responsive protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156399.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   |||||=||||*||||||||||||| targets:1207   GGUCCGCGCGCGCGCAGAGUCAGU   1230 Target Full Sequence	2.0	Zea mays ethylene responsive protein (LOC100283499), mRNA	NA	coding protein	psRNATarget
EZ075484.1	ncRNA:24   CCAGGUGCGCACGCGUCUCAGUCA   1   |*|=|=||||||||||||*||||| targets:20   GAUUCGCGCGUGCGCAGAAUCAGU   43 Target Full Sequence	2.5	TSA: Zea mays contig11121, mRNA sequence	NA	coding protein	psRNATarget