Search result

BaseInfo

ncRNA ID	novel_zma_miR4559
Species	Zea mays
Class	miRNA
Genome position	Chr10:4216826-4216921 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	1 - ACUAGUACUCCCUCCGUUUCUUUU - 24
Stem-loop(if miRNA)	--ACUA                                         A       GUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUA U       |||||||||||||||||||||||||||||||||||||||||       UAUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCACGU U UGCGUA                                         U
Stem-loop sequence	ACUAGUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAUUUUGCACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUAUAUGCGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240753.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||||*| targets:74   AAAAGAAACGGAGGGAGUACUACU   97 Target Full Sequence	1.5	Sequence 6748 from Patent EP2985353	NA	coding protein	psRNATarget
JB169084.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||||*| targets:74   AAAAGAAACGGAGGGAGUACUACU   97 Target Full Sequence	1.5	Sequence 6748 from Patent EP2559767	NA	coding protein	psRNATarget
HI408623.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||||*| targets:74   AAAAGAAACGGAGGGAGUACUACU   97 Target Full Sequence	1.5	Sequence 6748 from Patent EP2074227	NA	coding protein	psRNATarget
EU965844.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||||** targets:1353   AAAAGAAACGGAGGGAGUACUAUA   1376 Target Full Sequence	2.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||||** targets:1353   AAAAGAAACGGAGGGAGUACUAUA   1376 Target Full Sequence	2.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||*||* targets:2861   AAAAGAAACGGAGGGAGUACAAGG   2884 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||*||* targets:2878   AAAAGAAACGGAGGGAGUACAAGG   2901 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||*||* targets:2984   AAAAGAAACGGAGGGAGUACAAGG   3007 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||||||||||||||||||*||* targets:3763   AAAAGAAACGGAGGGAGUACAAGG   3786 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669416.2	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||-||||||||||||||||||* targets:553   AAAA-AAACGGAGGGAGUACUAGC   575 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100275307), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403294.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||*|||||||||||||||||** targets:75   AAAAAAAACGGAGGGAGUACUACA   98 Target Full Sequence	2.5	Sequence 1419 from Patent EP2074227	NA	coding protein	psRNATarget
JB163755.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||*|||||||||||||||||** targets:75   AAAAAAAACGGAGGGAGUACUACA   98 Target Full Sequence	2.5	Sequence 1419 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235424.1	ncRNA:24   UUUUCUUUGCCUCCCUCAUGAUCA   1   ||||*|||||||||||||||||** targets:75   AAAAAAAACGGAGGGAGUACUACA   98 Target Full Sequence	2.5	Sequence 1419 from Patent EP2985353	NA	coding protein	psRNATarget