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BaseInfo

ncRNA ID	novel_zma_miR4555
Species	Zea mays
Class	miRNA
Genome position	Chr3:22409911-22410053 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287165
Length	24
Mature sequence(if miRNA)	120 - AGUUAGUUGGCUAAAAAUUGGUAG - 143
Stem-loop(if miRNA)	--       U        ----------AUU    --  AUAAUUAUCUAGCUAACAAACAACUACCUAACUAUUAAC   AGUUAGU GGCUAAAA             GGUA  GU                                       U   ||||||| ||||||||             ||||  ||   UUAAUUA CCGAUUUU             GGUU  UG                                       A UA       -        AAUCAACUCUGUA    UU  GGAUUGAUUAUCAAGUUGAUAAUCGAUAAAAAUCAUUUA
Stem-loop sequence	AGUUAGUUGGCUAAAAAUUGGUAGUAUAAUUAUCUAGCUAACAAACAACUACCUAACUAUUAACUAAUUUACUAAAAAUAGCUAAUAGUUGAACUAUUAGUUAGGGUUUUUGGAUGUCUCAACUAAUUUUAGCCAUUAAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069057.2	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:900   CUAACAAUUUUUAGCCAACUAACU   923 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0151M04 mRNA, complete cds	NA	coding protein	psRNATarget
HI403030.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:163   CUAACAAUUUUUAGCCAACUAACU   186 Target Full Sequence	0.0	Sequence 1155 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235160.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:163   CUAACAAUUUUUAGCCAACUAACU   186 Target Full Sequence	0.0	Sequence 1155 from Patent EP2985353	NA	coding protein	psRNATarget
JB163491.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:163   CUAACAAUUUUUAGCCAACUAACU   186 Target Full Sequence	0.0	Sequence 1155 from Patent EP2559767	NA	coding protein	psRNATarget
JB169053.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:157   CUAACAAUUUUUAGCCAACUAACU   180 Target Full Sequence	0.0	Sequence 6717 from Patent EP2559767	NA	coding protein	psRNATarget
HI408592.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:157   CUAACAAUUUUUAGCCAACUAACU   180 Target Full Sequence	0.0	Sequence 6717 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240722.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||||||||||| targets:157   CUAACAAUUUUUAGCCAACUAACU   180 Target Full Sequence	0.0	Sequence 6717 from Patent EP2985353	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*||||||||||||||||||=| targets:781   CUAGCAAUUUUUAGCCAACUAAUU   804 Target Full Sequence	1.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*||||||||||||||||||=| targets:599   CUAGCAAUUUUUAGCCAACUAAUU   622 Target Full Sequence	1.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001158676.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   ||=|||||||||||||||*||||| targets:184   CUGCCAAUUUUUAGCCAAAUAACU   207 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285786 (si618065b11), mRNA	NA	coding protein	psRNATarget
EU973949.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   ||=|||||||||||||||*||||| targets:184   CUGCCAAUUUUUAGCCAAAUAACU   207 Target Full Sequence	1.5	Zea mays clone 424851 nuclear ribonuclease Z mRNA, complete cds	NA	coding protein	psRNATarget
HI402970.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||=|||||||| targets:152   CUAACAAUUUUUAGCUAACUAACU   175 Target Full Sequence	1.5	Sequence 1095 from Patent EP2074227	NA	coding protein	psRNATarget
JB163431.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||=|||||||| targets:152   CUAACAAUUUUUAGCUAACUAACU   175 Target Full Sequence	1.5	Sequence 1095 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235100.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*|||||||||||=|||||||| targets:152   CUAACAAUUUUUAGCUAACUAACU   175 Target Full Sequence	1.5	Sequence 1095 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020542504.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*=||||||||||||=|||||| targets:2484   CUAAUAAUUUUUAGCCAGCUAACU   2507 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147983.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*=|||||||||=||||||||| targets:1804   CUAAUAAUUUUUAGUCAACUAACU   1827 Target Full Sequence	1.5	Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA	NA	coding protein	psRNATarget
BT041400.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*=|||||||||=||||||||| targets:1804   CUAAUAAUUUUUAGUCAACUAACU   1827 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   GAUGGUUAAAAA-UCGGUUGAUUGA   1   |||*||||||||-|||||||||||| targets:2096   CUAGCAAUUUUUUAGCCAACUAACU   2120 Target Full Sequence	3.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549505.1	ncRNA:24   GAUGGUUAAAAA-UCGGUUGAUUGA   1   |||*||||||||-|||||||||||| targets:408   CUAGCAAUUUUUUAGCCAACUAACU   432 Target Full Sequence	3.0	PREDICTED: Zea mays Protein LSD1 (cl889_1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AF305892.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   |||*||||||*||||||||||||| targets:1866   CUAGCAAUUUGUAGCCAACUAACU   1889 Target Full Sequence	1.0	Zea mays microtubule-binding protein TANGLED1 mRNA, complete cds	NA	coding protein	psRNATarget
EZ105418.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *||*=|||||||||=||||||||| targets:77   AUAGUAAUUUUUAGUCAACUAACU   100 Target Full Sequence	1.5	TSA: Zea mays contig41075, mRNA sequence	NA	coding protein	psRNATarget
EU951762.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *|||||*||||||||||||*|||| targets:673   GUACCAUUUUUUAGCCAACAAACU   696 Target Full Sequence	2.5	Zea mays clone 998418 mRNA sequence	NA	coding protein	psRNATarget
LQ238849.1	ncRNA:24   GAUGGUUAAA-AAUCGGUUGAUUGA   1   ||**=|||||-|||||||||||||| targets:415   CUCGUAAUUUCUUAGCCAACUAACU   439 Target Full Sequence	2.0	Sequence 4844 from Patent EP2985353	NA	coding protein	psRNATarget
HI406719.1	ncRNA:24   GAUGGUUAAA-AAUCGGUUGAUUGA   1   ||**=|||||-|||||||||||||| targets:415   CUCGUAAUUUCUUAGCCAACUAACU   439 Target Full Sequence	2.0	Sequence 4844 from Patent EP2074227	NA	coding protein	psRNATarget
JB167180.1	ncRNA:24   GAUGGUUAAA-AAUCGGUUGAUUGA   1   ||**=|||||-|||||||||||||| targets:415   CUCGUAAUUUCUUAGCCAACUAACU   439 Target Full Sequence	2.0	Sequence 4844 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008657107.2	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *||*||*||||||||||||*|||| targets:2013   GUAGCAUUUUUUAGCCAACAAACU   2036 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657108.2	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *||*||*||||||||||||*|||| targets:1965   GUAGCAUUUUUUAGCCAACAAACU   1988 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384586 (LOC100384586), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001177091.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *||*||*||||||||||||*|||| targets:709   GUAGCAUUUUUUAGCCAACAAACU   732 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384586 (LOC100384586), mRNA	NA	coding protein	psRNATarget
BT083710.1	ncRNA:24   GAUGGUUAAAAAUCGGUUGAUUGA   1   *||*||*||||||||||||*|||| targets:709   GUAGCAUUUUUUAGCCAACAAACU   732 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0030M14 mRNA, complete cds	NA	coding protein	psRNATarget