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BaseInfo

ncRNA ID	novel_zma_miR4554
Species	Zea mays
Class	miRNA
Genome position	Chr3:54850058-54850119 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	39 - AGGAUUGAAGGGGAUUGGAGAGGA - 62
Stem-loop(if miRNA)	--A      A         GA A      UA    GGAUUG AGGGGAUUG  G GGAAAU  G    |||||| |||||||||  | ||||||    CCUAAC UCCCCUAAC  C CCUUUA  U AGC      C         UC A      CU
Stem-loop sequence	AGGAUUGAAGGGGAUUGGAGAGGAAAUUAGUUCAUUUCCACCUCAAUCCCCUCCAAUCCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||||||||||||||||||||||* targets:58   UCCUCUCCAAUCCCCUUCAAUCCC   81 Target Full Sequence	1.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||||*|||||||||||||||||* targets:1023   UCCUCACCAAUCCCCUUCAAUCCA   1046 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||||||||||||=||||* targets:91   UCUCCUCCAAUCCCCUUCGAUCCA   114 Target Full Sequence	2.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
EU967673.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||=||||||||||||||* targets:946   UCUGCUCCGAUCCCCUUCAAUCCC   969 Target Full Sequence	2.0	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||=||||||||||||||* targets:1072   UCUGCUCCGAUCCCCUUCAAUCCC   1095 Target Full Sequence	2.0	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget
HI405881.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110 Target Full Sequence	2.5	Sequence 4006 from Patent EP2074227	NA	coding protein	psRNATarget
JB166342.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110 Target Full Sequence	2.5	Sequence 4006 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238011.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:87   UUUUUUCCAAUCCCAUUCAAUCCA   110 Target Full Sequence	2.5	Sequence 4006 from Patent EP2985353	NA	coding protein	psRNATarget
JB166294.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111 Target Full Sequence	2.5	Sequence 3958 from Patent EP2559767	NA	coding protein	psRNATarget
HI405833.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111 Target Full Sequence	2.5	Sequence 3958 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237963.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:88   UUUUUUCCAAUCCCAUUCAAUCCA   111 Target Full Sequence	2.5	Sequence 3958 from Patent EP2985353	NA	coding protein	psRNATarget
EU944907.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |==|=|||||||||*||||||||* targets:337   UUUUUUCCAAUCCCAUUCAAUCCA   360 Target Full Sequence	2.5	Zea mays clone 235115 mRNA sequence	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	3.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	3.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:67   UCCCCCUUAAUCCCCUUCAAUCCU   90 Target Full Sequence	3.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|||||||||||*|||||||* targets:3273   UCCCCUCCAAUCCCCCUCAAUCCA   3296 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|||||||||||*|||||||* targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|||||||||||*|||||||* targets:1594   UCCCCUCCAAUCCCCCUCAAUCCA   1617 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|||||||||||*|||||||* targets:3921   UCCACUCCAAUCCCCCUCAAUCCC   3944 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:821   UCCCCCUUAAUCCCCUUCAAUCCU   844 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:860   UCCCCCUUAAUCCCCUUCAAUCCU   883 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*|*==|||||||||||||||| targets:865   UCCCCCUUAAUCCCCUUCAAUCCU   888 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
AY112376.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=||||||||*|||||||||* targets:386   UCCAUUCCAAUCCACUUCAAUCCA   409 Target Full Sequence	2.5	Zea mays CL41055_1 mRNA sequence	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   *****||*|||||||||||||||| targets:133   GAAAAUCAAAUCCCCUUCAAUCCU   156 Target Full Sequence	1.0	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
EU942791.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   ||=*||||=|*||||||||||||* targets:587   UCUCCUCCGACCCCCUUCAAUCCA   610 Target Full Sequence	3.0	Zea mays clone 1536943 mRNA sequence	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=*=||||||||||||||||* targets:1415   UCCGUAUCAAUCCCCUUCAAUCCA   1438 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=*=||||||||||||||||* targets:1459   UCCGUAUCAAUCCCCUUCAAUCCA   1482 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=*=||||||||||||||||* targets:1477   UCCGUAUCAAUCCCCUUCAAUCCA   1500 Target Full Sequence	3.0	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=*=||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	3.0	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   AGGAGAGGUUAGGGGAAGUUAGGA   1   |||*=*=||||||||||||||||* targets:1491   UCCGUAUCAAUCCCCUUCAAUCCA   1514 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget