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BaseInfo

ncRNA ID novel_zma_miR4553
Species Zea mays
Class miRNA
Genome position Chr3:62371858-62371919 [-]
Reference genome RefGen_v4
Source SRR2287161;SRR2287164
Length 24
Mature sequence(if miRNA) 39 - CGGACAUAAGCUUACGUUCGACGG - 62
Stem-loop(if miRNA) --        A     C    G      CGA
  CGGACAUA GCUUA GUUC ACGGCU   C
  |||||||| ||||| |||| ||||||
  GCCUGUAU CGAAU CAGG UGUUGA   U
CA        C     A    A      CAG
Stem-loop sequence CGGACAUAAGCUUACGUUCGACGGCUCGACUGACAGUUGUAGGACAUAAGCCUAUGUCCGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB167420.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  *|||||=||*|||||||||||||*
targets:3   ACGUCGGACAUAAGCUUAUGUCCA   26

3.0 Sequence 5084 from Patent EP2559767 NA coding protein psRNATarget
HI406959.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  *|||||=||*|||||||||||||*
targets:3   ACGUCGGACAUAAGCUUAUGUCCA   26

3.0 Sequence 5084 from Patent EP2074227 NA coding protein psRNATarget
LQ239089.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  *|||||=||*|||||||||||||*
targets:3   ACGUCGGACAUAAGCUUAUGUCCA   26

3.0 Sequence 5084 from Patent EP2985353 NA coding protein psRNATarget
HI406938.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  ||*||*|||*|||||||||||||*
targets:53   CCAUCUAACAUAAGCUUAUGUCCA   76

3.0 Sequence 5063 from Patent EP2074227 NA coding protein psRNATarget
JB167399.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  ||*||*|||*|||||||||||||*
targets:53   CCAUCUAACAUAAGCUUAUGUCCA   76

3.0 Sequence 5063 from Patent EP2559767 NA coding protein psRNATarget
LQ239068.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  ||*||*|||*|||||||||||||*
targets:53   CCAUCUAACAUAAGCUUAUGUCCA   76

3.0 Sequence 5063 from Patent EP2985353 NA coding protein psRNATarget
EU944465.1
ncRNA:24   GGCAGCUUGCAUUCGAAUACAGGC   1
  ||*||*|||*|||||||||||||*
targets:181   CCAUCUAACAUAAGCUUAUGUCCA   204

3.0 Zea mays clone 219525 mRNA sequence NA coding protein psRNATarget
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