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BaseInfo

ncRNA ID	novel_zma_miR4550
Species	Zea mays
Class	miRNA
Genome position	Chr3:3270565-3270674 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287164;SRR2287165
Length	22
Mature sequence(if miRNA)	1 - AGGUGUUUGUUUGGAAUUAUAA - 22
Stem-loop(if miRNA)	--A   --          A        AUAUA                       U    GGU  GUUUGUUUGG AUUAUAAU     CGGAUUAUAUAAUCUAACUUAUU U    |||  |||||||||| ||||||||     |||||||||||||||||||||||    CCA  CAAAUAAAUC UAAUAUUA     GUUUAAUAUAUUAGAUUGAAUAA A AAC   GC          C        GUCAG                       A
Stem-loop sequence	AGGUGUUUGUUUGGAAUUAUAAUAUAUACGGAUUAUAUAAUCUAACUUAUUUUAAAAUAAGUUAGAUUAUAUAAUUUGGACUGAUUAUAAUCCUAAAUAAACCGACCCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY107155.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||||||||||||||||||||=* targets:628   UUAUAAUUCCAAACAAACACUG   649 Target Full Sequence	2.5	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
XM_008648079.2	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||||||||||||||||||||*| targets:2016   UUAUAAUUCCAAACAAACACGU   2037 Target Full Sequence	1.5	PREDICTED: Zea mays galactoside 2-alpha-L-fucosyltransferase (LOC103627780), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   |||||||*|||||||||||||* targets:5066   UUAUAAUCCCAAACAAACACCC   5087 Target Full Sequence	2.0	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ089583.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   |||||||*|||||||||||||* targets:25   UUAUAAUCCCAAACAAACACCA   46 Target Full Sequence	2.0	TSA: Zea mays contig25229, mRNA sequence	NA	coding protein	psRNATarget
BT055069.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   |||||||*=||||||||||||* targets:564   UUAUAAUCUCAAACAAACACCC   585 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
HI402992.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||||**|||||||||||||||| targets:85   UUAUUUUUCCAAACAAACACCU   106 Target Full Sequence	2.0	Sequence 1117 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235122.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||||**|||||||||||||||| targets:85   UUAUUUUUCCAAACAAACACCU   106 Target Full Sequence	2.0	Sequence 1117 from Patent EP2985353	NA	coding protein	psRNATarget
JB163453.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||||**|||||||||||||||| targets:85   UUAUUUUUCCAAACAAACACCU   106 Target Full Sequence	2.0	Sequence 1117 from Patent EP2559767	NA	coding protein	psRNATarget
BT018825.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   |||||||**||||||||||||* targets:506   UUAUAAUCGCAAACAAACACCC   527 Target Full Sequence	3.0	Zea mays clone EL01N0551A05.d mRNA sequence	NA	coding protein	psRNATarget
BT061362.1	ncRNA:22   AAUAUUAAGGUUUGUUUGUGGA   1   ||=||||**||||||||||||* targets:616   UUGUAAUCGCAAACAAACACCC   637 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0139D10 mRNA, complete cds	NA	coding protein	psRNATarget