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BaseInfo

ncRNA ID	novel_zma_miR4548
Species	Zea mays
Class	miRNA
Genome position	Chr3:143821925-143821977 [-]
Reference genome	RefGen_v4
Source	SRR2287161
Length	21
Mature sequence(if miRNA)	33 - AAGUUAAACUUUGUUGGAUAU - 53
Stem-loop(if miRNA)	-A  UU    UU   --     AUUAG   AG  AAAC  UGU  UGGAU     A   ||  ||||  |||  |||||     U   UU  UUUG  ACG  GCCUG     G GA  UU    -U   UG     AACUA
Stem-loop sequence	AAGUUAAACUUUGUUGGAUAUUAGAUGAUCAAGUCCGGUGCAUGUUUUUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT054711.2	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   ||||||=|=|||||||||||| targets:10   AUAUCCGAUAAAGUUUAACUU   30 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0106I11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645583.2	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   ||=||*||||||||||||||* targets:2673   AUGUCGAACAAAGUUUAACUC   2693 Target Full Sequence	3.0	PREDICTED: Zea mays Zinc finger BED domain-containing protein DAYSLEEPER (LOC100285178), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001158072.1	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   ||=||*||||||||||||||* targets:2603   AUGUCGAACAAAGUUUAACUC   2623 Target Full Sequence	3.0	Zea mays Zinc finger BED domain-containing protein DAYSLEEPER (LOC100285178), mRNA	NA	coding protein	psRNATarget
EU971141.1	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   ||=||*||||||||||||||* targets:2603   AUGUCGAACAAAGUUUAACUC   2623 Target Full Sequence	3.0	Zea mays clone 358300 transposon protein mRNA, complete cds	NA	coding protein	psRNATarget
BT039146.1	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   ||=||*||||||||||||||* targets:276   AUGUCGAACAAAGUUUAACUC   296 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0377B23 mRNA, complete cds	NA	coding protein	psRNATarget
EU940857.1	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   *|*||||||||||||||||*| targets:1006   CUUUCCAACAAAGUUUAACCU   1026 Target Full Sequence	2.5	Zea mays clone 1164521 mRNA sequence	NA	coding protein	psRNATarget
EZ078514.1	ncRNA:21   UAUAGGUUGUUUCAAAUUGAA   1   *|*||||||||||||||||*| targets:67   CUUUCCAACAAAGUUUAACCU   87 Target Full Sequence	2.5	TSA: Zea mays contig14153, mRNA sequence	NA	coding protein	psRNATarget