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BaseInfo

ncRNA ID	novel_zma_miR4547
Species	Zea mays
Class	miRNA
Genome position	Chr10:15729243-15729304 [-]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287164
Length	24
Mature sequence(if miRNA)	39 - AGGAUUGGAGAGGAUUGAGGAGGA - 62
Stem-loop(if miRNA)	--          A        GA      UA   AGGAUUGGAG GGAUUGAG  GGAAAU  G   |||||||||| ||||||||  ||||||   UCCUAACCUC CCUAACUU  CCUUUA  U CC          C        UC      CU
Stem-loop sequence	AGGAUUGGAGAGGAUUGAGGAGGAAAUUAGUUCAUUUCCCUUUCAAUCCCCUCCAAUCCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403355.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|||||||||||*|||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|||||||||||*|||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|||||||||||*|||||||||| targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	1.5	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
JB166853.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	1.5	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
HI406392.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	1.5	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||*|||||||||||||||||||* targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	1.0	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:550   UCC-CCUCAAUCCUCUCCGAUCCU   572 Target Full Sequence	1.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:578   UCC-CCUCAAUCCUCUCCGAUCCU   600 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||-||||||||||||||=||||| targets:580   UCC-CCUCAAUCCUCUCCGAUCCU   602 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   AGGA-GGAGUUAGGAGAGGUUAGGA   1   ||||-||||||||||||||||||=* targets:1065   UCCUACCUCAAUCCUCUCCAAUCUC   1089 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||*||||||||||||=||||||* targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||*|||||||||*|||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||*|||||||||*|||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |||*|||||||||*|||||||||| targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   AGGA-GGAGUUAGGAGAGGUUAGGA   1   |=||-|||||||||||||||||=|* targets:835   UUCUACCUCAAUCCUCUCCAAUUCC   859 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   AGGA-GGAGUUAGGAGAGGUUAGGA   1   |=||-|||||||||||||||||=|* targets:1145   UUCUACCUCAAUCCUCUCCAAUUCC   1169 Target Full Sequence	2.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   AGGA-GGAGUUAGGAGAGGUUAGGA   1   |=||-|||||||||||||||||=|* targets:1157   UUCUACCUCAAUCCUCUCCAAUUCC   1181 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|*|||||||||*|||||||||| targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	1.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|*|||||||||*|||||||||| targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	1.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   |=|-|||=|||||*|||||||||| targets:78   UUC-CCUUAAUCCCCUCCAAUCCU   100 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   *||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   *||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   *||*|||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   AGGAGGAGUUAGGAGAGGUUAGGA   1   *||*|||||||||*|||||||||* targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	2.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget