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BaseInfo

ncRNA ID novel_zma_miR4545
Species Zea mays
Class miRNA
Genome position Chr3:179109562-179109702 [-]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 1 - GGGGUAGAACCGAACAAGCCCGAA - 24
Stem-loop(if miRNA) --A              -AU                    A         UACGGAUUGGA    A     A   AC
   GGGCUUGUUCGGUU   UUUUAAUCCAUAUGGAUUGA GGGGAUUGA           GGGG UUUUG CUU  U
   ||||||||||||||   |||||||||||||||||||| |||||||||           |||| ||||| |||
   CCCGAACAAGCCAA   GGGGUUAGGUAUACCUAACU CCCCUAACU           CCCC AAAAC GAG  A
AAG              GAU                    C         -----------    C     -   GG
Stem-loop sequence AGGGCUUGUUCGGUUAUUUUUAAUCCAUAUGGAUUGAAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACUAGGGAGCAAAACCCCCUCAAUCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGCCCGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001348011.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|||||||||||||||||||||
targets:351   UUGGGGCUUGUUCGGUUCUACCCC   374

0.0 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|||||||||||||||||||||
targets:690   UUAGGGCUUGUUCGGUUCUACCCC   713

0.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |*||||||||||||||||||||||
targets:877   UACGGGCUUGUUCGGUUCUACCCC   900

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |*||||||||||||||||||||||
targets:1669   UACGGGCUUGUUCGGUUCUACCCC   1692

0.0 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:24   AAG-CCCGAACAAGCCAAGAUGGGG   1
  *||-|||||||||||||||||||||
targets:914   CUCAGGGCUUGUUCGGUUCUACCCC   938

0.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   AAG-CCCGAACAAGCCAAGAUGGGG   1
  *||-|||||||||||||||||||||
targets:794   CUCAGGGCUUGUUCGGUUCUACCCC   818

0.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   AAG-CCCGAACAAGCCAAGAUGGGG   1
  *||-|||||||||||||||||||||
targets:794   CUCAGGGCUUGUUCGGUUCUACCCC   818

0.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
EZ061352.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:104   UGAGGGCUUGUUCGGUUCUACCCC   127

0.0 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
BT064935.1
ncRNA:24   AAG-CCCGAACAAGCCAAGAUGGGG   1
  *||-||||||||||||||||||=||
targets:743   CUCAGGGCUUGUUCGGUUCUACUCC   767

1.5 Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds NA coding protein psRNATarget
BT062922.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:832   UGAGGGCUUGUUCGGUUCUACCCC   855

0.0 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU959258.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:778   UGAGGGCUUGUUCGGUUCUACCCC   801

0.0 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959053.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:778   UGAGGGCUUGUUCGGUUCUACCCC   801

0.0 Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959345.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:779   UGAGGGCUUGUUCGGUUCUACCCC   802

0.0 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:851   UGAGGGCUUGUUCGGUUCUACCCC   874

0.0 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:1896   UAAGGGCUUGUUCGGUUCUACCCC   1919

0.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||||
targets:1896   UAAGGGCUUGUUCGGUUCUACCCC   1919

0.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|||||||||||*|||||||||
targets:845   UUAGGGCUUGUUCGAUUCUACCCC   868

1.5 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
EU959055.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:780   UGAGGGCUUGUUCGGUUYUACCCC   803

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
EU956568.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**|||||||||||||||||||=|
targets:1536   UGAGGGCUUGUUCGGUUCUACCUC   1559

1.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008654469.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|||||||||||*|||||||||
targets:3026   UUAGGGCUUGUUCGUUUCUACCCC   3049

1.5 PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ****||||||||||||||||||||
targets:883   AAAUGGCUUGUUCGGUUCUACCCC   906

0.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||||*||||
targets:952   UAAGGGCUUGUUCGGUUCUCCCCC   975

1.5 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||||*||||
targets:990   UAAGGGCUUGUUCGGUUCUCCCCC   1013

1.5 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1337   UAAGGGCUUGUUCGGUUAUACCCC   1360

1.5 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1381   UAAGGGCUUGUUCGGUUAUACCCC   1404

1.5 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1399   UAAGGGCUUGUUCGGUUAUACCCC   1422

1.5 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1413   UAAGGGCUUGUUCGGUUAUACCCC   1436

1.5 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1413   UAAGGGCUUGUUCGGUUAUACCCC   1436

1.5 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  |**||||||||||||||*||||||
targets:1604   UGGGGGCUUGUUCGGUUAUACCCC   1627

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
HI406643.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|*|||||||||*|||||||||
targets:4   UUAGAGCUUGUUCGUUUCUACCCC   27

1.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
LQ238773.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|*|||||||||*|||||||||
targets:4   UUAGAGCUUGUUCGUUUCUACCCC   27

1.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
JB167104.1
ncRNA:24   AAGCCCGAACAAGCCAAGAUGGGG   1
  ||*|*|||||||||*|||||||||
targets:4   UUAGAGCUUGUUCGUUUCUACCCC   27

1.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
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