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BaseInfo

ncRNA ID novel_zma_miR4536
Species Zea mays
Class miRNA
Genome position Chr3:223295567-223295619 [+]
Reference genome RefGen_v4
Source SRR2287161
Length 24
Mature sequence(if miRNA) 1 - GAGAGCUAGAAUGACGAAAGAUGG - 24
Stem-loop(if miRNA) GA   C     UG     -A    GG
  GAG UAGAA  ACGAA  GAUG  U
  ||| |||||  |||||  ||||  A
  CUC AUUUU  UGUUU  UUAU  A
AG   -     GU     CG    AA
Stem-loop sequence GAGAGCUAGAAUGACGAAAGAUGGGUAAAAUAUUGCUUUGUUGUUUUACUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ111102.1
ncRNA:24   GGUAGAAAGCAGUAAGAUCGAGAG   1
  |||||||||**|||||||||||||
targets:116   CCAUCUUUCACCAUUCUAGCUCUC   139

2.0 TSA: Zea mays contig46763, mRNA sequence NA coding protein psRNATarget
AY111231.1
ncRNA:24   GGUAGAAAGCAGUAAGAUCGAGAG   1
  |||||||||**|||||||||||||
targets:251   CCAUCUUUCACCAUUCUAGCUCUC   274

2.0 Zea mays CL19652_1 mRNA sequence NA coding protein psRNATarget