Search result

BaseInfo

ncRNA ID	novel_zma_miR4529
Species	Zea mays
Class	miRNA
Genome position	Chr2:161365941-161366063 [+]
Reference genome	RefGen_v4
Source	SRR2287161;SRR2287164;SRR2287165;SRR3341905;SRR4237224;SRR4237225
Length	21
Mature sequence(if miRNA)	1 - UAGUUUGGGAGCAAGGGGAUU - 21
Stem-loop(if miRNA)	--                     U             GA              C       A   UAGUUUGGGAGCAAGGGGAUU GAGGGGAUUGAAG  GCUAAAAUCCUCUU CUAUUUA A   ||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||   AUCAAAUCCUCGUUCCCUUAA CUUCCCUAACUUC  CGAUUUUAGGGGAA GGUAAAU A CA                     -             UC              A       U
Stem-loop sequence	UAGUUUGGGAGCAAGGGGAUUUGAGGGGAUUGAAGGAGCUAAAAUCCUCUUCCUAUUUAAAAUUAAAUGGAAAGGGGAUUUUAGCCUCUUCAAUCCCUUCAAUUCCCUUGCUCCUAAACUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943966.1	ncRNA:21   UUAGGGGAACGAGGGUUUGAU   1   ||||=||||||||||||||*| targets:344   AAUCUCCUUGCUCCCAAACAA   364 Target Full Sequence	2.5	Zea mays clone 1702383 mRNA sequence	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:21   UUAGGGGAACGAGGGUUUGAU   1   ||||=||||||||||||||*| targets:2793   AAUCUCCUUGCUCCCAAACAA   2813 Target Full Sequence	2.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   UUAGGGGAACGAGGGUUUGAU   1   |=||||=||||||||||||*| targets:28   AGUCCCUUUGCUCCCAAACAA   48 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_008658083.2	ncRNA:21   UUAGGGGAACGAGGGUUUGAU   1   |*|||=*|||||||||||||= targets:439   ACUCCUGUUGCUCCCAAACUG   459 Target Full Sequence	3.0	PREDICTED: Zea mays IQ-domain 25 (LOC103635692), mRNA	NA	coding protein	psRNATarget