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BaseInfo

ncRNA ID	novel_zma_miR4526
Species	Zea mays
Class	miRNA
Genome position	Chr2:91912866-91912999 [+]
Reference genome	RefGen_v4
Source	SRR2287161
Length	24
Mature sequence(if miRNA)	1 - AAGGGCUUGUUUGGGAUCAAAGGU - 24
Stem-loop(if miRNA)	--A               U      -    A   U               G   C CC     C   A    AGGGCUUGUUUGGGA CAAAGG UAAU GAG GGAUUGAGGGGGCUA AAU C  UACUA UUA U    ||||||||||||||| |||||| |||| ||| ||||||||||||||| ||| |  ||||| |||    UCCCGAACAAACCCU GUUUCC AUUA CUC CCUAACUCCCCCGAU UUA G  GUGAU AGU U AAA               -      C    C   C               A   A AA     A   U
Stem-loop sequence	AAGGGCUUGUUUGGGAUCAAAGGUAAUAGAGUGGAUUGAGGGGGCUAGAAUCCCCUACUACUUAAUUUUGAAUAGUGAAGAAUUAUAGCCCCCUCAAUCCCCUCCAUUACCCUUUGUCCCAAACAAGCCCUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001150586.2	ncRNA:22   GAAACUAGGGUUUGUUCGGGAA   1   |||||||||||||||||||||* targets:1   CUUUGAUCCCAAACAAGCCCUA   22 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276883 (LOC100276883), mRNA	NA	coding protein	psRNATarget
EU968858.1	ncRNA:24   UGGAAACUAGGGUUUGUUCGGGAA   1   ||||||**|||||||||||||||* targets:1167   ACCUUUACUCCCAAACAAGCCCUC   1190 Target Full Sequence	3.0	Zea mays clone 324588 mRNA sequence	NA	coding protein	psRNATarget
AY104107.2	ncRNA:24   UGGAAACUAGGGUUUGUUCGGGAA   1   ||||||**|||||||||||||||* targets:1308   ACCUUUACUCCCAAACAAGCCCUC   1331 Target Full Sequence	3.0	Zea mays PCO062189 mRNA sequence	NA	coding protein	psRNATarget
BT033702.1	ncRNA:24   UGGAAACUAGGGUUUGUUCGGGAA   1   ||||||**|||||||||||||||* targets:1060   ACCUUUACUCCCAAACAAGCCCUC   1083 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0115E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137008.1	ncRNA:24   UGGAAACUAGGGUUUGUUCGGGAA   1   ||||||**|||||||||||||||* targets:1060   ACCUUUACUCCCAAACAAGCCCUC   1083 Target Full Sequence	3.0	Zea mays calcineurin B-like protein (CBL1), mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:24   UGGAAACUAGGGUUUGUUCGGGAA   1   ||=*|||*|=|||||||||||||* targets:1695   ACUCUUGCUUCCAAACAAGCCCUA   1718 Target Full Sequence	3.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:2730   AUUUCACUUGCUCCCAAACAAGCCCUA   2756 Target Full Sequence	2.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675165.2	ncRNA:24   UGGA--AACUAGGGUUUGUUCGGGAA   1   |=||--|||*|||||||||||||*|| targets:2794   AUCUCCUUGCUCCCAAACAAGCCAUU   2819 Target Full Sequence	2.5	PREDICTED: Zea mays Calmodulin-7 (LOC100502442), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:2642   AUUUCACUUGCUCCCAAACAAGCCCUA   2668 Target Full Sequence	2.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
BT062966.1	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:2642   AUUUCACUUGCUCCCAAACAAGCCCUA   2668 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
EU943966.1	ncRNA:24   UGGA--AACUAGGGUUUGUUCGGGAA   1   |=||--|||*|||||||||||||*|| targets:345   AUCUCCUUGCUCCCAAACAAGCCAUU   370 Target Full Sequence	2.5	Zea mays clone 1702383 mRNA sequence	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:106   AUUUCACUUGCUCCCAAACAAGCCCUA   132 Target Full Sequence	2.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
HI406027.1	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:106   AUUUCACUUGCUCCCAAACAAGCCCUA   132 Target Full Sequence	2.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
JB166488.1	ncRNA:24   UGGA---AACUAGGGUUUGUUCGGGAA   1   |==|---|||*|||||||||||||||* targets:106   AUUUCACUUGCUCCCAAACAAGCCCUA   132 Target Full Sequence	2.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget